miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8221 3' -57.1 NC_001978.2 + 242 0.67 0.487997
Target:  5'- -cUCAGCggcagcguugGCGuuCCCGGUCcgaaGCUCCGg -3'
miRNA:   3'- uaAGUCG----------CGCu-GGGCUAGug--CGAGGC- -5'
8221 3' -57.1 NC_001978.2 + 416 0.7 0.31322
Target:  5'- -gUCGGCGCGACggucgugaagCUcgcaguaacgcaaGAUCACGUUCCGg -3'
miRNA:   3'- uaAGUCGCGCUG----------GG-------------CUAGUGCGAGGC- -5'
8221 3' -57.1 NC_001978.2 + 761 0.66 0.540989
Target:  5'- gGUUCAcCGgGACCCGAagGCGCUg-- -3'
miRNA:   3'- -UAAGUcGCgCUGGGCUagUGCGAggc -5'
8221 3' -57.1 NC_001978.2 + 1709 0.66 0.551831
Target:  5'- cGUUCAGCGCGACgUGAUC-CGgUa-- -3'
miRNA:   3'- -UAAGUCGCGCUGgGCUAGuGCgAggc -5'
8221 3' -57.1 NC_001978.2 + 5685 0.68 0.390277
Target:  5'- --gCAGCGuUGGCgCCGGUCGCG-UCCGu -3'
miRNA:   3'- uaaGUCGC-GCUG-GGCUAGUGCgAGGC- -5'
8221 3' -57.1 NC_001978.2 + 8015 0.67 0.447424
Target:  5'- uUUCAGCG-GaACgUGcgCGCGCUCCGc -3'
miRNA:   3'- uAAGUCGCgC-UGgGCuaGUGCGAGGC- -5'
8221 3' -57.1 NC_001978.2 + 8653 0.67 0.487997
Target:  5'- -gUCGGCG-GGCUCGAUCucagggaacuuGCGCUUCa -3'
miRNA:   3'- uaAGUCGCgCUGGGCUAG-----------UGCGAGGc -5'
8221 3' -57.1 NC_001978.2 + 12396 0.66 0.551831
Target:  5'- ---aGGCGuCGACCaCGuUCACGCUgaCCGu -3'
miRNA:   3'- uaagUCGC-GCUGG-GCuAGUGCGA--GGC- -5'
8221 3' -57.1 NC_001978.2 + 12511 0.66 0.529147
Target:  5'- -gUCGGCGUu-CCCGGUCggcuucacgcuguACGaCUCCGg -3'
miRNA:   3'- uaAGUCGCGcuGGGCUAG-------------UGC-GAGGC- -5'
8221 3' -57.1 NC_001978.2 + 13574 0.7 0.291211
Target:  5'- gGUUCGGCGuCGACuCCGuUCGCGCUgaCGc -3'
miRNA:   3'- -UAAGUCGC-GCUG-GGCuAGUGCGAg-GC- -5'
8221 3' -57.1 NC_001978.2 + 13604 0.68 0.427852
Target:  5'- cUUCAGCacccgguuacCGACCUGGguaACGCUCCGc -3'
miRNA:   3'- uAAGUCGc---------GCUGGGCUag-UGCGAGGC- -5'
8221 3' -57.1 NC_001978.2 + 16044 0.68 0.427852
Target:  5'- ---aAGgGUGACCCGGguaCGgGCUCCGu -3'
miRNA:   3'- uaagUCgCGCUGGGCUa--GUgCGAGGC- -5'
8221 3' -57.1 NC_001978.2 + 17249 0.7 0.321892
Target:  5'- -gUCGGCGCacuACCCGcgCACgGCUUCGu -3'
miRNA:   3'- uaAGUCGCGc--UGGGCuaGUG-CGAGGC- -5'
8221 3' -57.1 NC_001978.2 + 18613 0.7 0.294173
Target:  5'- -aUCAGCGCgucgcauucgcuGACCCGuugaaggcggcaGCGCUCCGa -3'
miRNA:   3'- uaAGUCGCG------------CUGGGCuag---------UGCGAGGC- -5'
8221 3' -57.1 NC_001978.2 + 18935 0.66 0.498412
Target:  5'- gGUUCGG-GUGACUCGAcccggCACGCUgagCCGg -3'
miRNA:   3'- -UAAGUCgCGCUGGGCUa----GUGCGA---GGC- -5'
8221 3' -57.1 NC_001978.2 + 19058 0.67 0.487997
Target:  5'- -gUCAGCGCGgucGCCCaGUUGucuaGCUCCGu -3'
miRNA:   3'- uaAGUCGCGC---UGGGcUAGUg---CGAGGC- -5'
8221 3' -57.1 NC_001978.2 + 19485 0.67 0.477686
Target:  5'- gGUUCAG-GCG-CUCu-UCGCGCUCCGc -3'
miRNA:   3'- -UAAGUCgCGCuGGGcuAGUGCGAGGC- -5'
8221 3' -57.1 NC_001978.2 + 19535 0.67 0.447424
Target:  5'- --cCGGCGcCGACCacAUCACGC-CCGg -3'
miRNA:   3'- uaaGUCGC-GCUGGgcUAGUGCGaGGC- -5'
8221 3' -57.1 NC_001978.2 + 19883 0.67 0.477686
Target:  5'- ---gGGC-CGACgCGAUucaCGCGCUCCGg -3'
miRNA:   3'- uaagUCGcGCUGgGCUA---GUGCGAGGC- -5'
8221 3' -57.1 NC_001978.2 + 20455 0.72 0.218709
Target:  5'- --cCGGCGCGACUCGAcuucggccuUCGCcGCUUCGg -3'
miRNA:   3'- uaaGUCGCGCUGGGCU---------AGUG-CGAGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.