Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8221 | 3' | -57.1 | NC_001978.2 | + | 39855 | 0.67 | 0.447424 |
Target: 5'- cGUUCAGgGCG--UCGG-CGCGCUCCGc -3' miRNA: 3'- -UAAGUCgCGCugGGCUaGUGCGAGGC- -5' |
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8221 | 3' | -57.1 | NC_001978.2 | + | 39732 | 0.71 | 0.25614 |
Target: 5'- cUUCGGCGUG-CCUGAUCuuguugaagauGCGUUCCGc -3' miRNA: 3'- uAAGUCGCGCuGGGCUAG-----------UGCGAGGC- -5' |
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8221 | 3' | -57.1 | NC_001978.2 | + | 39405 | 0.66 | 0.508924 |
Target: 5'- ---gAGCGUGAUCgGGUCGCGCUg-- -3' miRNA: 3'- uaagUCGCGCUGGgCUAGUGCGAggc -5' |
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8221 | 3' | -57.1 | NC_001978.2 | + | 39340 | 1.07 | 0.000583 |
Target: 5'- cAUUCAGCGCGACCCGAUCACGCUCCGg -3' miRNA: 3'- -UAAGUCGCGCUGGGCUAGUGCGAGGC- -5' |
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8221 | 3' | -57.1 | NC_001978.2 | + | 37956 | 0.66 | 0.530219 |
Target: 5'- --cCGGC-CGACCCGcUCACGCg-CGa -3' miRNA: 3'- uaaGUCGcGCUGGGCuAGUGCGagGC- -5' |
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8221 | 3' | -57.1 | NC_001978.2 | + | 37798 | 0.66 | 0.540989 |
Target: 5'- --gCAGCGCGcaauaGCCCu-UCAUgGCUCCGu -3' miRNA: 3'- uaaGUCGCGC-----UGGGcuAGUG-CGAGGC- -5' |
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8221 | 3' | -57.1 | NC_001978.2 | + | 36482 | 0.76 | 0.126119 |
Target: 5'- ----cGCGUGGCCCG-UCGCGUUCCGa -3' miRNA: 3'- uaaguCGCGCUGGGCuAGUGCGAGGC- -5' |
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8221 | 3' | -57.1 | NC_001978.2 | + | 35451 | 0.66 | 0.551831 |
Target: 5'- uUUCGGCGCG-UCCGuaCugGCgUCCGc -3' miRNA: 3'- uAAGUCGCGCuGGGCuaGugCG-AGGC- -5' |
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8221 | 3' | -57.1 | NC_001978.2 | + | 34330 | 0.69 | 0.338115 |
Target: 5'- --aCAGCGUGGCuCCGG-CAaGCUCCGc -3' miRNA: 3'- uaaGUCGCGCUG-GGCUaGUgCGAGGC- -5' |
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8221 | 3' | -57.1 | NC_001978.2 | + | 34226 | 0.67 | 0.457395 |
Target: 5'- --aCGGCGCucaguuGCCCacguGggCACGCUCCGg -3' miRNA: 3'- uaaGUCGCGc-----UGGG----CuaGUGCGAGGC- -5' |
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8221 | 3' | -57.1 | NC_001978.2 | + | 33315 | 0.66 | 0.551831 |
Target: 5'- --gCAGCGCGAaCCGAaCcCGUUCCu -3' miRNA: 3'- uaaGUCGCGCUgGGCUaGuGCGAGGc -5' |
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8221 | 3' | -57.1 | NC_001978.2 | + | 32325 | 0.67 | 0.447424 |
Target: 5'- -cUgGGCGUcguGACCCGGUCgacguugaGCGCUUCGc -3' miRNA: 3'- uaAgUCGCG---CUGGGCUAG--------UGCGAGGC- -5' |
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8221 | 3' | -57.1 | NC_001978.2 | + | 29017 | 0.67 | 0.457395 |
Target: 5'- --cCGGCGCccuuGAacaccuUCCGGUCGCGCUUCGu -3' miRNA: 3'- uaaGUCGCG----CU------GGGCUAGUGCGAGGC- -5' |
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8221 | 3' | -57.1 | NC_001978.2 | + | 28359 | 0.66 | 0.530219 |
Target: 5'- -aUCaAGCGCGAgCCCGG-CGCGUUgCa -3' miRNA: 3'- uaAG-UCGCGCU-GGGCUaGUGCGAgGc -5' |
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8221 | 3' | -57.1 | NC_001978.2 | + | 25967 | 0.72 | 0.243111 |
Target: 5'- -gUgAGCGCGACCCGggCAaGUUCCc -3' miRNA: 3'- uaAgUCGCGCUGGGCuaGUgCGAGGc -5' |
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8221 | 3' | -57.1 | NC_001978.2 | + | 25563 | 0.7 | 0.306257 |
Target: 5'- --aCGGCGUGACCCG-UgGCGC-CCa -3' miRNA: 3'- uaaGUCGCGCUGGGCuAgUGCGaGGc -5' |
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8221 | 3' | -57.1 | NC_001978.2 | + | 24038 | 0.67 | 0.451398 |
Target: 5'- -gUCGGCgaccugaucaauuacGCGACCCGuugcgggaAUCGCGC-CCGu -3' miRNA: 3'- uaAGUCG---------------CGCUGGGC--------UAGUGCGaGGC- -5' |
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8221 | 3' | -57.1 | NC_001978.2 | + | 20455 | 0.72 | 0.218709 |
Target: 5'- --cCGGCGCGACUCGAcuucggccuUCGCcGCUUCGg -3' miRNA: 3'- uaaGUCGCGCUGGGCU---------AGUG-CGAGGC- -5' |
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8221 | 3' | -57.1 | NC_001978.2 | + | 19883 | 0.67 | 0.477686 |
Target: 5'- ---gGGC-CGACgCGAUucaCGCGCUCCGg -3' miRNA: 3'- uaagUCGcGCUGgGCUA---GUGCGAGGC- -5' |
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8221 | 3' | -57.1 | NC_001978.2 | + | 19535 | 0.67 | 0.447424 |
Target: 5'- --cCGGCGcCGACCacAUCACGC-CCGg -3' miRNA: 3'- uaaGUCGC-GCUGGgcUAGUGCGaGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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