miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8223 3' -59 NC_001978.2 + 15955 0.66 0.468603
Target:  5'- gGCGCcGACUCGAcguucCCGGUCCccaGGGUCc -3'
miRNA:   3'- -UGCGaCUGGGCU-----GGCCGGGa--UUCAGc -5'
8223 3' -59 NC_001978.2 + 26019 0.66 0.458696
Target:  5'- -gGCUcGACCCguccgcGACCGuGCCC-AGGUUGa -3'
miRNA:   3'- ugCGA-CUGGG------CUGGC-CGGGaUUCAGC- -5'
8223 3' -59 NC_001978.2 + 17183 0.66 0.458696
Target:  5'- aAUGUccGCCCGACCGGCCUUcgugauAGcCGa -3'
miRNA:   3'- -UGCGacUGGGCUGGCCGGGAu-----UCaGC- -5'
8223 3' -59 NC_001978.2 + 22350 0.66 0.458696
Target:  5'- -gGCUucCCgGACCGGUCCggcGUCGg -3'
miRNA:   3'- ugCGAcuGGgCUGGCCGGGauuCAGC- -5'
8223 3' -59 NC_001978.2 + 39161 0.66 0.448902
Target:  5'- gACGCUGACgCCGuGCCGaCCCgGGG-CGa -3'
miRNA:   3'- -UGCGACUG-GGC-UGGCcGGGaUUCaGC- -5'
8223 3' -59 NC_001978.2 + 22978 0.66 0.448902
Target:  5'- --aUUGGUCCGGCCGGaCCCU-AGUCGc -3'
miRNA:   3'- ugcGACUGGGCUGGCC-GGGAuUCAGC- -5'
8223 3' -59 NC_001978.2 + 23324 0.66 0.429667
Target:  5'- gACGUguucaCCGACCGGCCg-AAGUCc -3'
miRNA:   3'- -UGCGacug-GGCUGGCCGGgaUUCAGc -5'
8223 3' -59 NC_001978.2 + 5097 0.66 0.429667
Target:  5'- cGCGCuUGAUCCGGCC-GUCa-AAGUCGg -3'
miRNA:   3'- -UGCG-ACUGGGCUGGcCGGgaUUCAGC- -5'
8223 3' -59 NC_001978.2 + 23814 0.66 0.420233
Target:  5'- aGCGCUcGACCCGgcgucGCCGGaagCCUGGG-Ca -3'
miRNA:   3'- -UGCGA-CUGGGC-----UGGCCg--GGAUUCaGc -5'
8223 3' -59 NC_001978.2 + 36651 0.66 0.420233
Target:  5'- gACGCUGAgcgggaagcCCUGAgCGcCCCUGAGcCGg -3'
miRNA:   3'- -UGCGACU---------GGGCUgGCcGGGAUUCaGC- -5'
8223 3' -59 NC_001978.2 + 20239 0.67 0.392699
Target:  5'- gGCGCUGAUCUGAgCGucaacGUCCUGGGUg- -3'
miRNA:   3'- -UGCGACUGGGCUgGC-----CGGGAUUCAgc -5'
8223 3' -59 NC_001978.2 + 16165 0.67 0.366365
Target:  5'- gACGUcGGCagCGGcaagggugauauCCGGCCCUAGGUCa -3'
miRNA:   3'- -UGCGaCUGg-GCU------------GGCCGGGAUUCAGc -5'
8223 3' -59 NC_001978.2 + 5646 0.68 0.349498
Target:  5'- -gGCUGACCCGuGCCGGuaCCCgucaggAAGUgGc -3'
miRNA:   3'- ugCGACUGGGC-UGGCC--GGGa-----UUCAgC- -5'
8223 3' -59 NC_001978.2 + 38615 0.68 0.341274
Target:  5'- uCGCUGaaauGCCCGAcgaaccugaaCCGGCCCcc-GUCGc -3'
miRNA:   3'- uGCGAC----UGGGCU----------GGCCGGGauuCAGC- -5'
8223 3' -59 NC_001978.2 + 108 0.68 0.341274
Target:  5'- uCGUUGGCCUGGggGGCgCCUGGGUCc -3'
miRNA:   3'- uGCGACUGGGCUggCCG-GGAUUCAGc -5'
8223 3' -59 NC_001978.2 + 33668 0.68 0.317448
Target:  5'- uCGCUguggGACUCGAugcauuCCGGCCCgGGGUCa -3'
miRNA:   3'- uGCGA----CUGGGCU------GGCCGGGaUUCAGc -5'
8223 3' -59 NC_001978.2 + 21628 0.69 0.302273
Target:  5'- gUGCUGACCCGACgGGgCUguUGGGggCGg -3'
miRNA:   3'- uGCGACUGGGCUGgCCgGG--AUUCa-GC- -5'
8223 3' -59 NC_001978.2 + 39345 0.7 0.272925
Target:  5'- aGCGC-GACCCGAucacgcuCCGGCC---GGUCGa -3'
miRNA:   3'- -UGCGaCUGGGCU-------GGCCGGgauUCAGC- -5'
8223 3' -59 NC_001978.2 + 35733 0.71 0.234764
Target:  5'- -gGCUucgaGugCCGACCGGUCUUcgGGGUCGa -3'
miRNA:   3'- ugCGA----CugGGCUGGCCGGGA--UUCAGC- -5'
8223 3' -59 NC_001978.2 + 12871 0.72 0.19028
Target:  5'- uACGuCUGACCCGACgccccauaGGUguUCUGAGUCGg -3'
miRNA:   3'- -UGC-GACUGGGCUGg-------CCG--GGAUUCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.