Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 8223 | 3' | -59 | NC_001978.2 | + | 36651 | 0.66 | 0.420233 |
|
Target: 5'- gACGCUGAgcgggaagcCCUGAgCGcCCCUGAGcCGg -3' miRNA: 3'- -UGCGACU---------GGGCUgGCcGGGAUUCaGC- -5' |
|||||||
| 8223 | 3' | -59 | NC_001978.2 | + | 38615 | 0.68 | 0.341274 |
|
Target: 5'- uCGCUGaaauGCCCGAcgaaccugaaCCGGCCCcc-GUCGc -3' miRNA: 3'- uGCGAC----UGGGCU----------GGCCGGGauuCAGC- -5' |
|||||||
| 8223 | 3' | -59 | NC_001978.2 | + | 39161 | 0.66 | 0.448902 |
|
Target: 5'- gACGCUGACgCCGuGCCGaCCCgGGG-CGa -3' miRNA: 3'- -UGCGACUG-GGC-UGGCcGGGaUUCaGC- -5' |
|||||||
| 8223 | 3' | -59 | NC_001978.2 | + | 39345 | 0.7 | 0.272925 |
|
Target: 5'- aGCGC-GACCCGAucacgcuCCGGCC---GGUCGa -3' miRNA: 3'- -UGCGaCUGGGCU-------GGCCGGgauUCAGC- -5' |
|||||||
| 8223 | 3' | -59 | NC_001978.2 | + | 40000 | 1.08 | 0.000405 |
|
Target: 5'- gACGCUGACCCGACCGGCCCUAAGUCGu -3' miRNA: 3'- -UGCGACUGGGCUGGCCGGGAUUCAGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home