miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8224 5' -58.6 NC_001978.2 + 36108 0.7 0.318054
Target:  5'- cGCGAGGaaGCCGaaGCCGACGACc--- -3'
miRNA:   3'- cCGCUUCggCGGC--UGGCUGCUGcugc -5'
8224 5' -58.6 NC_001978.2 + 41408 0.7 0.318054
Target:  5'- gGGCGggGCgGCU--CCGAaguUGGCGGCGu -3'
miRNA:   3'- -CCGCuuCGgCGGcuGGCU---GCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 20242 0.69 0.324977
Target:  5'- aGGCcgugaagGAAGCCGCCGaaGCCGcUGAgGGCa -3'
miRNA:   3'- -CCG-------CUUCGGCGGC--UGGCuGCUgCUGc -5'
8224 5' -58.6 NC_001978.2 + 28447 0.69 0.325753
Target:  5'- gGGCG-AGaCGCUGACCcagcgGACGgACGGCGg -3'
miRNA:   3'- -CCGCuUCgGCGGCUGG-----CUGC-UGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 19613 0.69 0.325753
Target:  5'- uGGUGAccgaCGCCGACauucagGACGGCGACa -3'
miRNA:   3'- -CCGCUucg-GCGGCUGg-----CUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 32247 0.69 0.325753
Target:  5'- cGCGAAGCgcucaaCGUCGACCGggucACGACGcccaGCGg -3'
miRNA:   3'- cCGCUUCG------GCGGCUGGC----UGCUGC----UGC- -5'
8224 5' -58.6 NC_001978.2 + 9216 0.69 0.333589
Target:  5'- cGGcCGGAGCga-CGGCCGACGACaauGGCGa -3'
miRNA:   3'- -CC-GCUUCGgcgGCUGGCUGCUG---CUGC- -5'
8224 5' -58.6 NC_001978.2 + 22442 0.69 0.341562
Target:  5'- cGGCGcuGCCGUucugcacgUGACUGACGA-GACGu -3'
miRNA:   3'- -CCGCuuCGGCG--------GCUGGCUGCUgCUGC- -5'
8224 5' -58.6 NC_001978.2 + 9081 0.69 0.349673
Target:  5'- aGCGAuaccGgCGCCaauGCCGACGGCGAUa -3'
miRNA:   3'- cCGCUu---CgGCGGc--UGGCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 13084 0.69 0.349673
Target:  5'- cGGCGAGacgcugaacGCUGCCGGu--ACGGCGACGg -3'
miRNA:   3'- -CCGCUU---------CGGCGGCUggcUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 1559 0.69 0.357089
Target:  5'- cGCGAucauGCUuuaccaccugauaGCCGACCGG-GGCGACGc -3'
miRNA:   3'- cCGCUu---CGG-------------CGGCUGGCUgCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 29904 0.69 0.357919
Target:  5'- -cCGggGUCaCUGACCGuGCGACGGCa -3'
miRNA:   3'- ccGCuuCGGcGGCUGGC-UGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 32471 0.69 0.357919
Target:  5'- -aCGguGCCGaCuCGACCGACuGACGACc -3'
miRNA:   3'- ccGCuuCGGC-G-GCUGGCUG-CUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 34608 0.69 0.366301
Target:  5'- aGCGGAGCCGuCCGGCagGGuCGGacCGGCGa -3'
miRNA:   3'- cCGCUUCGGC-GGCUGg-CU-GCU--GCUGC- -5'
8224 5' -58.6 NC_001978.2 + 7200 0.69 0.366301
Target:  5'- cGcCGGAGCCGguUCGcuuCUGACGGCGGCGu -3'
miRNA:   3'- cC-GCUUCGGC--GGCu--GGCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 32155 0.68 0.374817
Target:  5'- -aCGAGGaaGCCGACCGG-GGCgGACGg -3'
miRNA:   3'- ccGCUUCggCGGCUGGCUgCUG-CUGC- -5'
8224 5' -58.6 NC_001978.2 + 17310 0.68 0.383466
Target:  5'- gGGCGuuGGUCGgCGuauCCGGCGGuCGGCGc -3'
miRNA:   3'- -CCGCu-UCGGCgGCu--GGCUGCU-GCUGC- -5'
8224 5' -58.6 NC_001978.2 + 32017 0.68 0.383466
Target:  5'- aGGCGGAGCUucagGCUGAgCGGgGGCG-CGu -3'
miRNA:   3'- -CCGCUUCGG----CGGCUgGCUgCUGCuGC- -5'
8224 5' -58.6 NC_001978.2 + 5378 0.68 0.383466
Target:  5'- gGGCGA--CCGCCGGgauugUCGGCGA-GACGg -3'
miRNA:   3'- -CCGCUucGGCGGCU-----GGCUGCUgCUGC- -5'
8224 5' -58.6 NC_001978.2 + 35698 0.68 0.383466
Target:  5'- -aCGGAGCCGgaGACgGACGAC-ACGg -3'
miRNA:   3'- ccGCUUCGGCggCUGgCUGCUGcUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.