miRNA display CGI


Results 41 - 60 of 111 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8224 5' -58.6 NC_001978.2 + 26526 0.67 0.428645
Target:  5'- uGUGucGCUGCCGAUCGAguACGACc -3'
miRNA:   3'- cCGCuuCGGCGGCUGGCUgcUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 4075 0.68 0.419359
Target:  5'- gGGCGAGaaguaccggguGCCGCUGaACCugGGCGAaguCGGCGa -3'
miRNA:   3'- -CCGCUU-----------CGGCGGC-UGG--CUGCU---GCUGC- -5'
8224 5' -58.6 NC_001978.2 + 3971 0.68 0.419359
Target:  5'- -cUGAAGCgGUCGGCCGucuCGGCGAa- -3'
miRNA:   3'- ccGCUUCGgCGGCUGGCu--GCUGCUgc -5'
8224 5' -58.6 NC_001978.2 + 1679 0.68 0.419359
Target:  5'- cGCGAGcccgaagcuuGCCGCCguGugCGACGuucagcGCGACGu -3'
miRNA:   3'- cCGCUU----------CGGCGG--CugGCUGC------UGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 17473 0.68 0.416596
Target:  5'- cGUGuuGCCGCCGACCGuguacgcauagucaGCGuCGuACGc -3'
miRNA:   3'- cCGCuuCGGCGGCUGGC--------------UGCuGC-UGC- -5'
8224 5' -58.6 NC_001978.2 + 9211 0.68 0.410195
Target:  5'- cGGCGAcggauucGCCGuaaCCGGCCGAauacacuucacCGGCGGCu -3'
miRNA:   3'- -CCGCUu------CGGC---GGCUGGCU-----------GCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 33825 0.68 0.410195
Target:  5'- cGCGGaacgccuucacGGUCGagCGAcCCGACGACGGCa -3'
miRNA:   3'- cCGCU-----------UCGGCg-GCU-GGCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 25405 0.68 0.410195
Target:  5'- cGcCGAcuacGCCGCCGACCGGuuCGGgcuCGACGu -3'
miRNA:   3'- cC-GCUu---CGGCGGCUGGCU--GCU---GCUGC- -5'
8224 5' -58.6 NC_001978.2 + 19370 0.68 0.410195
Target:  5'- cGGgGAAGCCaugaaGCCGuCgGGCGugGuCGa -3'
miRNA:   3'- -CCgCUUCGG-----CGGCuGgCUGCugCuGC- -5'
8224 5' -58.6 NC_001978.2 + 34263 0.68 0.409286
Target:  5'- cGGCGGAGCuUGCCGgagccacGCUGuacACGACGcGCGa -3'
miRNA:   3'- -CCGCUUCG-GCGGC-------UGGC---UGCUGC-UGC- -5'
8224 5' -58.6 NC_001978.2 + 27972 0.68 0.39847
Target:  5'- aGGCGAcGCUGaUUGACCcgcgucagccccagGACGGCGGCa -3'
miRNA:   3'- -CCGCUuCGGC-GGCUGG--------------CUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 5378 0.68 0.383466
Target:  5'- gGGCGA--CCGCCGGgauugUCGGCGA-GACGg -3'
miRNA:   3'- -CCGCUucGGCGGCU-----GGCUGCUgCUGC- -5'
8224 5' -58.6 NC_001978.2 + 35698 0.68 0.383466
Target:  5'- -aCGGAGCCGgaGACgGACGAC-ACGg -3'
miRNA:   3'- ccGCUUCGGCggCUGgCUGCUGcUGC- -5'
8224 5' -58.6 NC_001978.2 + 32017 0.68 0.383466
Target:  5'- aGGCGGAGCUucagGCUGAgCGGgGGCG-CGu -3'
miRNA:   3'- -CCGCUUCGG----CGGCUgGCUgCUGCuGC- -5'
8224 5' -58.6 NC_001978.2 + 17310 0.68 0.383466
Target:  5'- gGGCGuuGGUCGgCGuauCCGGCGGuCGGCGc -3'
miRNA:   3'- -CCGCu-UCGGCgGCu--GGCUGCU-GCUGC- -5'
8224 5' -58.6 NC_001978.2 + 32155 0.68 0.374817
Target:  5'- -aCGAGGaaGCCGACCGG-GGCgGACGg -3'
miRNA:   3'- ccGCUUCggCGGCUGGCUgCUG-CUGC- -5'
8224 5' -58.6 NC_001978.2 + 34608 0.69 0.366301
Target:  5'- aGCGGAGCCGuCCGGCagGGuCGGacCGGCGa -3'
miRNA:   3'- cCGCUUCGGC-GGCUGg-CU-GCU--GCUGC- -5'
8224 5' -58.6 NC_001978.2 + 7200 0.69 0.366301
Target:  5'- cGcCGGAGCCGguUCGcuuCUGACGGCGGCGu -3'
miRNA:   3'- cC-GCUUCGGC--GGCu--GGCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 29904 0.69 0.357919
Target:  5'- -cCGggGUCaCUGACCGuGCGACGGCa -3'
miRNA:   3'- ccGCuuCGGcGGCUGGC-UGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 32471 0.69 0.357919
Target:  5'- -aCGguGCCGaCuCGACCGACuGACGACc -3'
miRNA:   3'- ccGCuuCGGC-G-GCUGGCUG-CUGCUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.