miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8224 5' -58.6 NC_001978.2 + 29 0.66 0.486773
Target:  5'- aGGUG-AGCCGCCGgACCcaGGCGccccccaggccaACGACc -3'
miRNA:   3'- -CCGCuUCGGCGGC-UGG--CUGC------------UGCUGc -5'
8224 5' -58.6 NC_001978.2 + 22356 0.66 0.486773
Target:  5'- aGGUGAGGCUuCCcgGACCGGucCGGCGuCGg -3'
miRNA:   3'- -CCGCUUCGGcGG--CUGGCU--GCUGCuGC- -5'
8224 5' -58.6 NC_001978.2 + 1470 0.67 0.476817
Target:  5'- --aGGAGCCggaacgGCUGACCGGCGaACGAa- -3'
miRNA:   3'- ccgCUUCGG------CGGCUGGCUGC-UGCUgc -5'
8224 5' -58.6 NC_001978.2 + 6235 0.67 0.476817
Target:  5'- cGCGGAGUCGUCaaGACCGuCGAgCGcGCGa -3'
miRNA:   3'- cCGCUUCGGCGG--CUGGCuGCU-GC-UGC- -5'
8224 5' -58.6 NC_001978.2 + 12335 0.67 0.476817
Target:  5'- -uUGAAGCCGuCCGcuGCCGACGuCGuCa -3'
miRNA:   3'- ccGCUUCGGC-GGC--UGGCUGCuGCuGc -5'
8224 5' -58.6 NC_001978.2 + 9831 0.67 0.476817
Target:  5'- cGGCGAAGUCGgCaGGCgaaaCGAUGcACGACa -3'
miRNA:   3'- -CCGCUUCGGCgG-CUG----GCUGC-UGCUGc -5'
8224 5' -58.6 NC_001978.2 + 8645 0.67 0.466962
Target:  5'- aGGCGAAGCCGgacCCuACCG-CGACcaacGCGu -3'
miRNA:   3'- -CCGCUUCGGC---GGcUGGCuGCUGc---UGC- -5'
8224 5' -58.6 NC_001978.2 + 4613 0.67 0.466962
Target:  5'- cGGUG-GGCagCGaCgGGCgGACGACGACGa -3'
miRNA:   3'- -CCGCuUCG--GC-GgCUGgCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 31261 0.67 0.465983
Target:  5'- cGGCGccaacgucGAGUUcgucacgGCCaacGCCGACGGCGACGu -3'
miRNA:   3'- -CCGC--------UUCGG-------CGGc--UGGCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 29275 0.67 0.465983
Target:  5'- aGGaCGucacgcGCUGCCGACUGAcacugauaguucaCGACGGCa -3'
miRNA:   3'- -CC-GCuu----CGGCGGCUGGCU-------------GCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 20386 0.67 0.457214
Target:  5'- cGGCGAaggccgaagucgAGUCGCgccgguCGGCCGACGuCGcCGa -3'
miRNA:   3'- -CCGCU------------UCGGCG------GCUGGCUGCuGCuGC- -5'
8224 5' -58.6 NC_001978.2 + 8808 0.67 0.457214
Target:  5'- -aCGAAGCgCGCCGGUCGGgGGCGaaGCGg -3'
miRNA:   3'- ccGCUUCG-GCGGCUGGCUgCUGC--UGC- -5'
8224 5' -58.6 NC_001978.2 + 12489 0.67 0.457214
Target:  5'- gGGCGGcaguGCUGCCGucuCCGuCGGCGuuccCGg -3'
miRNA:   3'- -CCGCUu---CGGCGGCu--GGCuGCUGCu---GC- -5'
8224 5' -58.6 NC_001978.2 + 38654 0.67 0.457214
Target:  5'- gGGCGcu-CCGCCGucCCGAaCGcCGACGu -3'
miRNA:   3'- -CCGCuucGGCGGCu-GGCU-GCuGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 33047 0.67 0.451418
Target:  5'- cGCGAAGCCGcCCGugCGcuacugcccaacgccGCGccgguCGACa -3'
miRNA:   3'- cCGCUUCGGC-GGCugGC---------------UGCu----GCUGc -5'
8224 5' -58.6 NC_001978.2 + 12421 0.67 0.447576
Target:  5'- uGGCGAuuGCCGCCGcguuguccgGCCGuguCGGgaccguCGGCGa -3'
miRNA:   3'- -CCGCUu-CGGCGGC---------UGGCu--GCU------GCUGC- -5'
8224 5' -58.6 NC_001978.2 + 24655 0.67 0.447576
Target:  5'- gGGC-AAGCaCGCCGacacauauGCCGACcAUGACGc -3'
miRNA:   3'- -CCGcUUCG-GCGGC--------UGGCUGcUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 21239 0.67 0.447576
Target:  5'- cGCGcuGCCGCCGACgCGuuCGACcuuGACc -3'
miRNA:   3'- cCGCuuCGGCGGCUG-GCu-GCUG---CUGc -5'
8224 5' -58.6 NC_001978.2 + 25797 0.67 0.438052
Target:  5'- cGGCGucauaGCCGACCGAU-ACGGCa -3'
miRNA:   3'- -CCGCuucggCGGCUGGCUGcUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 30758 0.67 0.432394
Target:  5'- aGGgGAAGuuGCCGA-CGACcuucgugacguucguGACGACc -3'
miRNA:   3'- -CCgCUUCggCGGCUgGCUG---------------CUGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.