Results 21 - 40 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 9118 | 0.77 | 0.105228 |
Target: 5'- gGGUGAAGCCGCCGgugaaguguauucgGCCGGuuACGGCGa -3' miRNA: 3'- -CCGCUUCGGCGGC--------------UGGCUgcUGCUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 9211 | 0.68 | 0.410195 |
Target: 5'- cGGCGAcggauucGCCGuaaCCGGCCGAauacacuucacCGGCGGCu -3' miRNA: 3'- -CCGCUu------CGGC---GGCUGGCU-----------GCUGCUGc -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 9216 | 0.69 | 0.333589 |
Target: 5'- cGGcCGGAGCga-CGGCCGACGACaauGGCGa -3' miRNA: 3'- -CC-GCUUCGgcgGCUGGCUGCUG---CUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 9831 | 0.67 | 0.476817 |
Target: 5'- cGGCGAAGUCGgCaGGCgaaaCGAUGcACGACa -3' miRNA: 3'- -CCGCUUCGGCgG-CUG----GCUGC-UGCUGc -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 10051 | 0.76 | 0.128579 |
Target: 5'- -aCGAAGCCGCCGACCGuCGccauaguCGACc -3' miRNA: 3'- ccGCUUCGGCGGCUGGCuGCu------GCUGc -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 11028 | 0.66 | 0.52752 |
Target: 5'- cGCGAAGUCGCCugggcgcuGCgGACGucucCGGCGu -3' miRNA: 3'- cCGCUUCGGCGGc-------UGgCUGCu---GCUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 11526 | 0.71 | 0.261395 |
Target: 5'- cGCGAcGUCGCCuuacAUCGugGGCGACGc -3' miRNA: 3'- cCGCUuCGGCGGc---UGGCugCUGCUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 12335 | 0.67 | 0.476817 |
Target: 5'- -uUGAAGCCGuCCGcuGCCGACGuCGuCa -3' miRNA: 3'- ccGCUUCGGC-GGC--UGGCUGCuGCuGc -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 12421 | 0.67 | 0.447576 |
Target: 5'- uGGCGAuuGCCGCCGcguuguccgGCCGuguCGGgaccguCGGCGa -3' miRNA: 3'- -CCGCUu-CGGCGGC---------UGGCu--GCU------GCUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 12489 | 0.67 | 0.457214 |
Target: 5'- gGGCGGcaguGCUGCCGucuCCGuCGGCGuuccCGg -3' miRNA: 3'- -CCGCUu---CGGCGGCu--GGCuGCUGCu---GC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 12575 | 0.76 | 0.115245 |
Target: 5'- cGUGAAGCCGaCCGggaacGCCGACGA-GACGg -3' miRNA: 3'- cCGCUUCGGC-GGC-----UGGCUGCUgCUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 12765 | 0.76 | 0.125118 |
Target: 5'- uGGCGAcGCUGCCGACCGGCauuACG-CGc -3' miRNA: 3'- -CCGCUuCGGCGGCUGGCUGc--UGCuGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 13084 | 0.69 | 0.349673 |
Target: 5'- cGGCGAGacgcugaacGCUGCCGGu--ACGGCGACGg -3' miRNA: 3'- -CCGCUU---------CGGCGGCUggcUGCUGCUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 13207 | 0.7 | 0.281622 |
Target: 5'- gGGCGGcuuGCUGUgGACC-ACGACGGCc -3' miRNA: 3'- -CCGCUu--CGGCGgCUGGcUGCUGCUGc -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 13475 | 0.7 | 0.310493 |
Target: 5'- -uCGGAGCUuGCCGAagaUGACGGCGGCu -3' miRNA: 3'- ccGCUUCGG-CGGCUg--GCUGCUGCUGc -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 13815 | 0.66 | 0.537911 |
Target: 5'- cGGcCGGAGCCGCac-CCGugGccauucCGACGc -3' miRNA: 3'- -CC-GCUUCGGCGgcuGGCugCu-----GCUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 15647 | 0.72 | 0.236286 |
Target: 5'- cGGCGGcuUCGCUGGggcUCGACGGCGACa -3' miRNA: 3'- -CCGCUucGGCGGCU---GGCUGCUGCUGc -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 15699 | 0.72 | 0.242368 |
Target: 5'- aGCGAAGCCGCCGgaACCGuCGAgcCGuuGa -3' miRNA: 3'- cCGCUUCGGCGGC--UGGCuGCU--GCugC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 17310 | 0.68 | 0.383466 |
Target: 5'- gGGCGuuGGUCGgCGuauCCGGCGGuCGGCGc -3' miRNA: 3'- -CCGCu-UCGGCgGCu--GGCUGCU-GCUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 17473 | 0.68 | 0.416596 |
Target: 5'- cGUGuuGCCGCCGACCGuguacgcauagucaGCGuCGuACGc -3' miRNA: 3'- cCGCuuCGGCGGCUGGC--------------UGCuGC-UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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