miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8224 5' -58.6 NC_001978.2 + 29 0.66 0.486773
Target:  5'- aGGUG-AGCCGCCGgACCcaGGCGccccccaggccaACGACc -3'
miRNA:   3'- -CCGCuUCGGCGGC-UGG--CUGC------------UGCUGc -5'
8224 5' -58.6 NC_001978.2 + 1470 0.67 0.476817
Target:  5'- --aGGAGCCggaacgGCUGACCGGCGaACGAa- -3'
miRNA:   3'- ccgCUUCGG------CGGCUGGCUGC-UGCUgc -5'
8224 5' -58.6 NC_001978.2 + 1559 0.69 0.357089
Target:  5'- cGCGAucauGCUuuaccaccugauaGCCGACCGG-GGCGACGc -3'
miRNA:   3'- cCGCUu---CGG-------------CGGCUGGCUgCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 1679 0.68 0.419359
Target:  5'- cGCGAGcccgaagcuuGCCGCCguGugCGACGuucagcGCGACGu -3'
miRNA:   3'- cCGCUU----------CGGCGG--CugGCUGC------UGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 2739 0.66 0.486773
Target:  5'- cGGCaAGGUCGaucuuCCGGCgCGACGACG-CGu -3'
miRNA:   3'- -CCGcUUCGGC-----GGCUG-GCUGCUGCuGC- -5'
8224 5' -58.6 NC_001978.2 + 3381 0.72 0.230333
Target:  5'- cGGCGAAGaCCGUCGACC-AUGACcAUGu -3'
miRNA:   3'- -CCGCUUC-GGCGGCUGGcUGCUGcUGC- -5'
8224 5' -58.6 NC_001978.2 + 3615 0.7 0.30307
Target:  5'- uGGCGu-GCCGCUaacuCCGGCGuCGACa -3'
miRNA:   3'- -CCGCuuCGGCGGcu--GGCUGCuGCUGc -5'
8224 5' -58.6 NC_001978.2 + 3971 0.68 0.419359
Target:  5'- -cUGAAGCgGUCGGCCGucuCGGCGAa- -3'
miRNA:   3'- ccGCUUCGgCGGCUGGCu--GCUGCUgc -5'
8224 5' -58.6 NC_001978.2 + 4075 0.68 0.419359
Target:  5'- gGGCGAGaaguaccggguGCCGCUGaACCugGGCGAaguCGGCGa -3'
miRNA:   3'- -CCGCUU-----------CGGCGGC-UGG--CUGCU---GCUGC- -5'
8224 5' -58.6 NC_001978.2 + 4613 0.67 0.466962
Target:  5'- cGGUG-GGCagCGaCgGGCgGACGACGACGa -3'
miRNA:   3'- -CCGCuUCG--GC-GgCUGgCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 4769 0.71 0.277479
Target:  5'- cGGUGAGuucgcGCCGCCGAcugaagagcgcgauuCCcagccgGACGGCGACGu -3'
miRNA:   3'- -CCGCUU-----CGGCGGCU---------------GG------CUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 5132 0.79 0.071792
Target:  5'- aGCGuu-CCGCCGACCacGACGACGACGc -3'
miRNA:   3'- cCGCuucGGCGGCUGG--CUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 5378 0.68 0.383466
Target:  5'- gGGCGA--CCGCCGGgauugUCGGCGA-GACGg -3'
miRNA:   3'- -CCGCUucGGCGGCU-----GGCUGCUgCUGC- -5'
8224 5' -58.6 NC_001978.2 + 5844 0.71 0.261395
Target:  5'- cGGCaAGGUCGUugaGACgGACGACGGCa -3'
miRNA:   3'- -CCGcUUCGGCGg--CUGgCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 6235 0.67 0.476817
Target:  5'- cGCGGAGUCGUCaaGACCGuCGAgCGcGCGa -3'
miRNA:   3'- cCGCUUCGGCGG--CUGGCuGCU-GC-UGC- -5'
8224 5' -58.6 NC_001978.2 + 7200 0.69 0.366301
Target:  5'- cGcCGGAGCCGguUCGcuuCUGACGGCGGCGu -3'
miRNA:   3'- cC-GCUUCGGC--GGCu--GGCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 8299 0.72 0.223357
Target:  5'- cGGCGGcauacggcacgcgAGCCGCUGAgccugccUUGAUGACGGCGc -3'
miRNA:   3'- -CCGCU-------------UCGGCGGCU-------GGCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 8645 0.67 0.466962
Target:  5'- aGGCGAAGCCGgacCCuACCG-CGACcaacGCGu -3'
miRNA:   3'- -CCGCUUCGGC---GGcUGGCuGCUGc---UGC- -5'
8224 5' -58.6 NC_001978.2 + 8808 0.67 0.457214
Target:  5'- -aCGAAGCgCGCCGGUCGGgGGCGaaGCGg -3'
miRNA:   3'- ccGCUUCG-GCGGCUGGCUgCUGC--UGC- -5'
8224 5' -58.6 NC_001978.2 + 9081 0.69 0.349673
Target:  5'- aGCGAuaccGgCGCCaauGCCGACGGCGAUa -3'
miRNA:   3'- cCGCUu---CgGCGGc--UGGCUGCUGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.