miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8224 5' -58.6 NC_001978.2 + 20581 0.71 0.261395
Target:  5'- cGGCGAccGGuCUGcCCGACCuGACGGCGgaGCGc -3'
miRNA:   3'- -CCGCU--UC-GGC-GGCUGG-CUGCUGC--UGC- -5'
8224 5' -58.6 NC_001978.2 + 35984 0.72 0.227988
Target:  5'- gGGCGAcaccccggagacuGCCGCCGACCcgGGCGuuguguGCGACa -3'
miRNA:   3'- -CCGCUu------------CGGCGGCUGG--CUGC------UGCUGc -5'
8224 5' -58.6 NC_001978.2 + 32630 0.72 0.228572
Target:  5'- cGGCGcuGCCuacaaccgggaccgGCCGACUGACGcUGACGc -3'
miRNA:   3'- -CCGCuuCGG--------------CGGCUGGCUGCuGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 33915 0.72 0.230333
Target:  5'- uGGCGGAGCaucgggggaGgCGACCGGCGAagagaucaCGGCGc -3'
miRNA:   3'- -CCGCUUCGg--------CgGCUGGCUGCU--------GCUGC- -5'
8224 5' -58.6 NC_001978.2 + 15647 0.72 0.236286
Target:  5'- cGGCGGcuUCGCUGGggcUCGACGGCGACa -3'
miRNA:   3'- -CCGCUucGGCGGCU---GGCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 31071 0.72 0.242368
Target:  5'- -uCGAAGCCGCUG-CCGcugaGCGACuGACGa -3'
miRNA:   3'- ccGCUUCGGCGGCuGGC----UGCUG-CUGC- -5'
8224 5' -58.6 NC_001978.2 + 28995 0.71 0.246702
Target:  5'- gGGCGGAGUCGCCacgauugcccgacaGACCGGa-GCGACc -3'
miRNA:   3'- -CCGCUUCGGCGG--------------CUGGCUgcUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 5844 0.71 0.261395
Target:  5'- cGGCaAGGUCGUugaGACgGACGACGGCa -3'
miRNA:   3'- -CCGcUUCGGCGg--CUGgCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 11526 0.71 0.261395
Target:  5'- cGCGAcGUCGCCuuacAUCGugGGCGACGc -3'
miRNA:   3'- cCGCUuCGGCGGc---UGGCugCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 33853 0.73 0.197231
Target:  5'- cGGCGuuacccggguGCCGaCCGugcgcguguacGCCGACGACGACc -3'
miRNA:   3'- -CCGCuu--------CGGC-GGC-----------UGGCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 20956 0.73 0.190629
Target:  5'- aGGCGccacgaaggaacugGAGaCGCUGACgGACGGCGACa -3'
miRNA:   3'- -CCGC--------------UUCgGCGGCUGgCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 38143 0.73 0.182288
Target:  5'- gGGCG-AGCCGCUGAcgucCCGAaGGCGugGc -3'
miRNA:   3'- -CCGCuUCGGCGGCU----GGCUgCUGCugC- -5'
8224 5' -58.6 NC_001978.2 + 20653 0.82 0.0456
Target:  5'- aGGCGAAGaaGCgGauuGCCGACGACGACGu -3'
miRNA:   3'- -CCGCUUCggCGgC---UGGCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 5132 0.79 0.071792
Target:  5'- aGCGuu-CCGCCGACCacGACGACGACGc -3'
miRNA:   3'- cCGCuucGGCGGCUGG--CUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 36781 0.78 0.087359
Target:  5'- cGcCGGAGCCugaGCCGgagccuGCCGACGACGACGu -3'
miRNA:   3'- cC-GCUUCGG---CGGC------UGGCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 9118 0.77 0.105228
Target:  5'- gGGUGAAGCCGCCGgugaaguguauucgGCCGGuuACGGCGa -3'
miRNA:   3'- -CCGCUUCGGCGGC--------------UGGCUgcUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 35079 0.76 0.119759
Target:  5'- gGGCGggGCa-CUGACCGACGaacugauucagucauGCGACGa -3'
miRNA:   3'- -CCGCuuCGgcGGCUGGCUGC---------------UGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 12765 0.76 0.125118
Target:  5'- uGGCGAcGCUGCCGACCGGCauuACG-CGc -3'
miRNA:   3'- -CCGCUuCGGCGGCUGGCUGc--UGCuGC- -5'
8224 5' -58.6 NC_001978.2 + 37742 0.75 0.139501
Target:  5'- gGGCuauuGCgCGCUGcCCGACGACGGCGa -3'
miRNA:   3'- -CCGcuu-CG-GCGGCuGGCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 38016 0.74 0.168356
Target:  5'- gGGCGAuuacuGCgCGCUGcCCcagGACGACGACGg -3'
miRNA:   3'- -CCGCUu----CG-GCGGCuGG---CUGCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.