Results 1 - 20 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 29 | 0.66 | 0.486773 |
Target: 5'- aGGUG-AGCCGCCGgACCcaGGCGccccccaggccaACGACc -3' miRNA: 3'- -CCGCuUCGGCGGC-UGG--CUGC------------UGCUGc -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 28588 | 0.66 | 0.52752 |
Target: 5'- aGCGAAGCgCGCgGGCaaGugGguaACGACGu -3' miRNA: 3'- cCGCUUCG-GCGgCUGg-CugC---UGCUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 20816 | 0.66 | 0.496826 |
Target: 5'- cGGUGAcaAGCuCGaCgGACUGAagGACGACGc -3' miRNA: 3'- -CCGCU--UCG-GC-GgCUGGCUg-CUGCUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 39831 | 0.66 | 0.506973 |
Target: 5'- -aCGAAGaCCGCgCGGCaGGCGcguACGACGg -3' miRNA: 3'- ccGCUUC-GGCG-GCUGgCUGC---UGCUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 38571 | 0.66 | 0.506973 |
Target: 5'- aGCGAAG-CGCCGGgcacgUCGGCguucggGACGGCGg -3' miRNA: 3'- cCGCUUCgGCGGCU-----GGCUG------CUGCUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 33782 | 0.66 | 0.537911 |
Target: 5'- cGCGAAGCgUGCUGGgCGcuCGACGuCGa -3' miRNA: 3'- cCGCUUCG-GCGGCUgGCu-GCUGCuGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 29158 | 0.66 | 0.52752 |
Target: 5'- cGGCGccuGCCGCuCGACCGGaacCGuACGu -3' miRNA: 3'- -CCGCuu-CGGCG-GCUGGCUgcuGC-UGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 31336 | 0.66 | 0.517205 |
Target: 5'- cGGCGuuGGCCGUgaCGAacUCGACGuuGGCGc -3' miRNA: 3'- -CCGCu-UCGGCG--GCU--GGCUGCugCUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 39638 | 0.66 | 0.506973 |
Target: 5'- uGCGGacgGGUCGaCCaccuuCCGGCGACGGCa -3' miRNA: 3'- cCGCU---UCGGC-GGcu---GGCUGCUGCUGc -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 25919 | 0.66 | 0.506973 |
Target: 5'- cGUGAAGCCGacuCCGGCCGuguCGuugucaccacacACGAUGa -3' miRNA: 3'- cCGCUUCGGC---GGCUGGCu--GC------------UGCUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 30374 | 0.66 | 0.537911 |
Target: 5'- cGcCGAAGCCGcCCGGCUcGCGugG-Ca -3' miRNA: 3'- cC-GCUUCGGC-GGCUGGcUGCugCuGc -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 26600 | 0.66 | 0.537911 |
Target: 5'- gGGCGuucgGGUCGUacuCGAUCGGCaGCGACa -3' miRNA: 3'- -CCGCu---UCGGCG---GCUGGCUGcUGCUGc -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 34318 | 0.66 | 0.506973 |
Target: 5'- cGGC-AAGCucCGCCGA-CGGCGcAUGACGu -3' miRNA: 3'- -CCGcUUCG--GCGGCUgGCUGC-UGCUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 27821 | 0.66 | 0.52752 |
Target: 5'- gGGCGGAcGCuuCGCCGaaGCCGcCGACuACGu -3' miRNA: 3'- -CCGCUU-CG--GCGGC--UGGCuGCUGcUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 17567 | 0.66 | 0.517205 |
Target: 5'- cGGUuacAAGCacaaGgCGACCGGCGACGuugGCGa -3' miRNA: 3'- -CCGc--UUCGg---CgGCUGGCUGCUGC---UGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 11028 | 0.66 | 0.52752 |
Target: 5'- cGCGAAGUCGCCugggcgcuGCgGACGucucCGGCGu -3' miRNA: 3'- cCGCUUCGGCGGc-------UGgCUGCu---GCUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 13815 | 0.66 | 0.537911 |
Target: 5'- cGGcCGGAGCCGCac-CCGugGccauucCGACGc -3' miRNA: 3'- -CC-GCUUCGGCGgcuGGCugCu-----GCUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 37868 | 0.66 | 0.506973 |
Target: 5'- cGGCGggGgCGCCGucCCGuACaACGuCGc -3' miRNA: 3'- -CCGCuuCgGCGGCu-GGC-UGcUGCuGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 25004 | 0.66 | 0.486773 |
Target: 5'- cGGUccGAAGcCCGCCGACUGAgcCGGguugcCGACu -3' miRNA: 3'- -CCG--CUUC-GGCGGCUGGCU--GCU-----GCUGc -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 28804 | 0.66 | 0.52752 |
Target: 5'- cGGCGAAuCauCCaauCCGACGACGGCa -3' miRNA: 3'- -CCGCUUcGgcGGcu-GGCUGCUGCUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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