miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8224 5' -58.6 NC_001978.2 + 40157 1.11 0.000344
Target:  5'- gGGCGAAGCCGCCGACCGACGACGACGa -3'
miRNA:   3'- -CCGCUUCGGCGGCUGGCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 20653 0.82 0.0456
Target:  5'- aGGCGAAGaaGCgGauuGCCGACGACGACGu -3'
miRNA:   3'- -CCGCUUCggCGgC---UGGCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 20471 0.8 0.062343
Target:  5'- cGGCGAcGUCgGCCGACCGGCG-CGACu -3'
miRNA:   3'- -CCGCUuCGG-CGGCUGGCUGCuGCUGc -5'
8224 5' -58.6 NC_001978.2 + 5132 0.79 0.071792
Target:  5'- aGCGuu-CCGCCGACCacGACGACGACGc -3'
miRNA:   3'- cCGCuucGGCGGCUGG--CUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 36781 0.78 0.087359
Target:  5'- cGcCGGAGCCugaGCCGgagccuGCCGACGACGACGu -3'
miRNA:   3'- cC-GCUUCGG---CGGC------UGGCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 9118 0.77 0.105228
Target:  5'- gGGUGAAGCCGCCGgugaaguguauucgGCCGGuuACGGCGa -3'
miRNA:   3'- -CCGCUUCGGCGGC--------------UGGCUgcUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 12575 0.76 0.115245
Target:  5'- cGUGAAGCCGaCCGggaacGCCGACGA-GACGg -3'
miRNA:   3'- cCGCUUCGGC-GGC-----UGGCUGCUgCUGC- -5'
8224 5' -58.6 NC_001978.2 + 35079 0.76 0.119759
Target:  5'- gGGCGggGCa-CUGACCGACGaacugauucagucauGCGACGa -3'
miRNA:   3'- -CCGCuuCGgcGGCUGGCUGC---------------UGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 12765 0.76 0.125118
Target:  5'- uGGCGAcGCUGCCGACCGGCauuACG-CGc -3'
miRNA:   3'- -CCGCUuCGGCGGCUGGCUGc--UGCuGC- -5'
8224 5' -58.6 NC_001978.2 + 10051 0.76 0.128579
Target:  5'- -aCGAAGCCGCCGACCGuCGccauaguCGACc -3'
miRNA:   3'- ccGCUUCGGCGGCUGGCuGCu------GCUGc -5'
8224 5' -58.6 NC_001978.2 + 18440 0.75 0.135769
Target:  5'- cGGCcguAGCgaCGCCGACaagggCGACGACGACGg -3'
miRNA:   3'- -CCGcu-UCG--GCGGCUG-----GCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 37742 0.75 0.139501
Target:  5'- gGGCuauuGCgCGCUGcCCGACGACGGCGa -3'
miRNA:   3'- -CCGcuu-CG-GCGGCuGGCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 36967 0.74 0.155386
Target:  5'- cGGUGGcaGGgUGCCGACCGGCaGCGGCa -3'
miRNA:   3'- -CCGCU--UCgGCGGCUGGCUGcUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 38016 0.74 0.168356
Target:  5'- gGGCGAuuacuGCgCGCUGcCCcagGACGACGACGg -3'
miRNA:   3'- -CCGCUu----CG-GCGGCuGG---CUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 38143 0.73 0.182288
Target:  5'- gGGCG-AGCCGCUGAcgucCCGAaGGCGugGc -3'
miRNA:   3'- -CCGCuUCGGCGGCU----GGCUgCUGCugC- -5'
8224 5' -58.6 NC_001978.2 + 20956 0.73 0.190629
Target:  5'- aGGCGccacgaaggaacugGAGaCGCUGACgGACGGCGACa -3'
miRNA:   3'- -CCGC--------------UUCgGCGGCUGgCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 33853 0.73 0.197231
Target:  5'- cGGCGuuacccggguGCCGaCCGugcgcguguacGCCGACGACGACc -3'
miRNA:   3'- -CCGCuu--------CGGC-GGC-----------UGGCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 38148 0.73 0.202444
Target:  5'- gGGCGAGccagucauacGCCGCCGACCG-CGAaCGcCa -3'
miRNA:   3'- -CCGCUU----------CGGCGGCUGGCuGCU-GCuGc -5'
8224 5' -58.6 NC_001978.2 + 26400 0.73 0.207777
Target:  5'- uGGUGAAGCCGCgCGAcuCCGGCaGGCaaccGGCGa -3'
miRNA:   3'- -CCGCUUCGGCG-GCU--GGCUG-CUG----CUGC- -5'
8224 5' -58.6 NC_001978.2 + 8299 0.72 0.223357
Target:  5'- cGGCGGcauacggcacgcgAGCCGCUGAgccugccUUGAUGACGGCGc -3'
miRNA:   3'- -CCGCU-------------UCGGCGGCU-------GGCUGCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.