miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8224 5' -58.6 NC_001978.2 + 26600 0.66 0.537911
Target:  5'- gGGCGuucgGGUCGUacuCGAUCGGCaGCGACa -3'
miRNA:   3'- -CCGCu---UCGGCG---GCUGGCUGcUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 17473 0.68 0.416596
Target:  5'- cGUGuuGCCGCCGACCGuguacgcauagucaGCGuCGuACGc -3'
miRNA:   3'- cCGCuuCGGCGGCUGGC--------------UGCuGC-UGC- -5'
8224 5' -58.6 NC_001978.2 + 9211 0.68 0.410195
Target:  5'- cGGCGAcggauucGCCGuaaCCGGCCGAauacacuucacCGGCGGCu -3'
miRNA:   3'- -CCGCUu------CGGC---GGCUGGCU-----------GCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 20471 0.8 0.062343
Target:  5'- cGGCGAcGUCgGCCGACCGGCG-CGACu -3'
miRNA:   3'- -CCGCUuCGG-CGGCUGGCUGCuGCUGc -5'
8224 5' -58.6 NC_001978.2 + 25919 0.66 0.506973
Target:  5'- cGUGAAGCCGacuCCGGCCGuguCGuugucaccacacACGAUGa -3'
miRNA:   3'- cCGCUUCGGC---GGCUGGCu--GC------------UGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 39638 0.66 0.506973
Target:  5'- uGCGGacgGGUCGaCCaccuuCCGGCGACGGCa -3'
miRNA:   3'- cCGCU---UCGGC-GGcu---GGCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 22356 0.66 0.486773
Target:  5'- aGGUGAGGCUuCCcgGACCGGucCGGCGuCGg -3'
miRNA:   3'- -CCGCUUCGGcGG--CUGGCU--GCUGCuGC- -5'
8224 5' -58.6 NC_001978.2 + 6235 0.67 0.476817
Target:  5'- cGCGGAGUCGUCaaGACCGuCGAgCGcGCGa -3'
miRNA:   3'- cCGCUUCGGCGG--CUGGCuGCU-GC-UGC- -5'
8224 5' -58.6 NC_001978.2 + 29275 0.67 0.465983
Target:  5'- aGGaCGucacgcGCUGCCGACUGAcacugauaguucaCGACGGCa -3'
miRNA:   3'- -CC-GCuu----CGGCGGCUGGCU-------------GCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 3971 0.68 0.419359
Target:  5'- -cUGAAGCgGUCGGCCGucuCGGCGAa- -3'
miRNA:   3'- ccGCUUCGgCGGCUGGCu--GCUGCUgc -5'
8224 5' -58.6 NC_001978.2 + 12421 0.67 0.447576
Target:  5'- uGGCGAuuGCCGCCGcguuguccgGCCGuguCGGgaccguCGGCGa -3'
miRNA:   3'- -CCGCUu-CGGCGGC---------UGGCu--GCU------GCUGC- -5'
8224 5' -58.6 NC_001978.2 + 1470 0.67 0.476817
Target:  5'- --aGGAGCCggaacgGCUGACCGGCGaACGAa- -3'
miRNA:   3'- ccgCUUCGG------CGGCUGGCUGC-UGCUgc -5'
8224 5' -58.6 NC_001978.2 + 28804 0.66 0.52752
Target:  5'- cGGCGAAuCauCCaauCCGACGACGGCa -3'
miRNA:   3'- -CCGCUUcGgcGGcu-GGCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 24655 0.67 0.447576
Target:  5'- gGGC-AAGCaCGCCGacacauauGCCGACcAUGACGc -3'
miRNA:   3'- -CCGcUUCG-GCGGC--------UGGCUGcUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 31336 0.66 0.517205
Target:  5'- cGGCGuuGGCCGUgaCGAacUCGACGuuGGCGc -3'
miRNA:   3'- -CCGCu-UCGGCG--GCU--GGCUGCugCUGC- -5'
8224 5' -58.6 NC_001978.2 + 12335 0.67 0.476817
Target:  5'- -uUGAAGCCGuCCGcuGCCGACGuCGuCa -3'
miRNA:   3'- ccGCUUCGGC-GGC--UGGCUGCuGCuGc -5'
8224 5' -58.6 NC_001978.2 + 25797 0.67 0.438052
Target:  5'- cGGCGucauaGCCGACCGAU-ACGGCa -3'
miRNA:   3'- -CCGCuucggCGGCUGGCUGcUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 33825 0.68 0.410195
Target:  5'- cGCGGaacgccuucacGGUCGagCGAcCCGACGACGGCa -3'
miRNA:   3'- cCGCU-----------UCGGCg-GCU-GGCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 34318 0.66 0.506973
Target:  5'- cGGC-AAGCucCGCCGA-CGGCGcAUGACGu -3'
miRNA:   3'- -CCGcUUCG--GCGGCUgGCUGC-UGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 2739 0.66 0.486773
Target:  5'- cGGCaAGGUCGaucuuCCGGCgCGACGACG-CGu -3'
miRNA:   3'- -CCGcUUCGGC-----GGCUG-GCUGCUGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.