Results 61 - 80 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8224 | 5' | -58.6 | NC_001978.2 | + | 1559 | 0.69 | 0.357089 |
Target: 5'- cGCGAucauGCUuuaccaccugauaGCCGACCGG-GGCGACGc -3' miRNA: 3'- cCGCUu---CGG-------------CGGCUGGCUgCUGCUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 9081 | 0.69 | 0.349673 |
Target: 5'- aGCGAuaccGgCGCCaauGCCGACGGCGAUa -3' miRNA: 3'- cCGCUu---CgGCGGc--UGGCUGCUGCUGc -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 13084 | 0.69 | 0.349673 |
Target: 5'- cGGCGAGacgcugaacGCUGCCGGu--ACGGCGACGg -3' miRNA: 3'- -CCGCUU---------CGGCGGCUggcUGCUGCUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 22442 | 0.69 | 0.341562 |
Target: 5'- cGGCGcuGCCGUucugcacgUGACUGACGA-GACGu -3' miRNA: 3'- -CCGCuuCGGCG--------GCUGGCUGCUgCUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 9216 | 0.69 | 0.333589 |
Target: 5'- cGGcCGGAGCga-CGGCCGACGACaauGGCGa -3' miRNA: 3'- -CC-GCUUCGgcgGCUGGCUGCUG---CUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 28447 | 0.69 | 0.325753 |
Target: 5'- gGGCG-AGaCGCUGACCcagcgGACGgACGGCGg -3' miRNA: 3'- -CCGCuUCgGCGGCUGG-----CUGC-UGCUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 32247 | 0.69 | 0.325753 |
Target: 5'- cGCGAAGCgcucaaCGUCGACCGggucACGACGcccaGCGg -3' miRNA: 3'- cCGCUUCG------GCGGCUGGC----UGCUGC----UGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 19613 | 0.69 | 0.325753 |
Target: 5'- uGGUGAccgaCGCCGACauucagGACGGCGACa -3' miRNA: 3'- -CCGCUucg-GCGGCUGg-----CUGCUGCUGc -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 20242 | 0.69 | 0.324977 |
Target: 5'- aGGCcgugaagGAAGCCGCCGaaGCCGcUGAgGGCa -3' miRNA: 3'- -CCG-------CUUCGGCGGC--UGGCuGCUgCUGc -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 36108 | 0.7 | 0.318054 |
Target: 5'- cGCGAGGaaGCCGaaGCCGACGACc--- -3' miRNA: 3'- cCGCUUCggCGGC--UGGCUGCUGcugc -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 41408 | 0.7 | 0.318054 |
Target: 5'- gGGCGggGCgGCU--CCGAaguUGGCGGCGu -3' miRNA: 3'- -CCGCuuCGgCGGcuGGCU---GCUGCUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 13475 | 0.7 | 0.310493 |
Target: 5'- -uCGGAGCUuGCCGAagaUGACGGCGGCu -3' miRNA: 3'- ccGCUUCGG-CGGCUg--GCUGCUGCUGc -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 3615 | 0.7 | 0.30307 |
Target: 5'- uGGCGu-GCCGCUaacuCCGGCGuCGACa -3' miRNA: 3'- -CCGCuuCGGCGGcu--GGCUGCuGCUGc -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 36709 | 0.7 | 0.302335 |
Target: 5'- cGGCGGAGCCugagcCCGucacggaGCCGGaGACGGCGc -3' miRNA: 3'- -CCGCUUCGGc----GGC-------UGGCUgCUGCUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 35825 | 0.7 | 0.295783 |
Target: 5'- cGGCgGGAGUgGUCGAgCugGGCGACGGCGu -3' miRNA: 3'- -CCG-CUUCGgCGGCUgG--CUGCUGCUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 13207 | 0.7 | 0.281622 |
Target: 5'- gGGCGGcuuGCUGUgGACC-ACGACGGCc -3' miRNA: 3'- -CCGCUu--CGGCGgCUGGcUGCUGCUGc -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 4769 | 0.71 | 0.277479 |
Target: 5'- cGGUGAGuucgcGCCGCCGAcugaagagcgcgauuCCcagccgGACGGCGACGu -3' miRNA: 3'- -CCGCUU-----CGGCGGCU---------------GG------CUGCUGCUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 25486 | 0.71 | 0.268003 |
Target: 5'- gGGCGAcGUCGagcCCGaACCGGuCGGCGGCGu -3' miRNA: 3'- -CCGCUuCGGC---GGC-UGGCU-GCUGCUGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 30289 | 0.71 | 0.268003 |
Target: 5'- -uCGAAGCCGCCGAg-GGCGACGuguACGa -3' miRNA: 3'- ccGCUUCGGCGGCUggCUGCUGC---UGC- -5' |
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8224 | 5' | -58.6 | NC_001978.2 | + | 20581 | 0.71 | 0.261395 |
Target: 5'- cGGCGAccGGuCUGcCCGACCuGACGGCGgaGCGc -3' miRNA: 3'- -CCGCU--UC-GGC-GGCUGG-CUGCUGC--UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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