miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8224 5' -58.6 NC_001978.2 + 17567 0.66 0.517205
Target:  5'- cGGUuacAAGCacaaGgCGACCGGCGACGuugGCGa -3'
miRNA:   3'- -CCGc--UUCGg---CgGCUGGCUGCUGC---UGC- -5'
8224 5' -58.6 NC_001978.2 + 18440 0.75 0.135769
Target:  5'- cGGCcguAGCgaCGCCGACaagggCGACGACGACGg -3'
miRNA:   3'- -CCGcu-UCG--GCGGCUG-----GCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 19370 0.68 0.410195
Target:  5'- cGGgGAAGCCaugaaGCCGuCgGGCGugGuCGa -3'
miRNA:   3'- -CCgCUUCGG-----CGGCuGgCUGCugCuGC- -5'
8224 5' -58.6 NC_001978.2 + 19613 0.69 0.325753
Target:  5'- uGGUGAccgaCGCCGACauucagGACGGCGACa -3'
miRNA:   3'- -CCGCUucg-GCGGCUGg-----CUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 20242 0.69 0.324977
Target:  5'- aGGCcgugaagGAAGCCGCCGaaGCCGcUGAgGGCa -3'
miRNA:   3'- -CCG-------CUUCGGCGGC--UGGCuGCUgCUGc -5'
8224 5' -58.6 NC_001978.2 + 20386 0.67 0.457214
Target:  5'- cGGCGAaggccgaagucgAGUCGCgccgguCGGCCGACGuCGcCGa -3'
miRNA:   3'- -CCGCU------------UCGGCG------GCUGGCUGCuGCuGC- -5'
8224 5' -58.6 NC_001978.2 + 20471 0.8 0.062343
Target:  5'- cGGCGAcGUCgGCCGACCGGCG-CGACu -3'
miRNA:   3'- -CCGCUuCGG-CGGCUGGCUGCuGCUGc -5'
8224 5' -58.6 NC_001978.2 + 20581 0.71 0.261395
Target:  5'- cGGCGAccGGuCUGcCCGACCuGACGGCGgaGCGc -3'
miRNA:   3'- -CCGCU--UC-GGC-GGCUGG-CUGCUGC--UGC- -5'
8224 5' -58.6 NC_001978.2 + 20653 0.82 0.0456
Target:  5'- aGGCGAAGaaGCgGauuGCCGACGACGACGu -3'
miRNA:   3'- -CCGCUUCggCGgC---UGGCUGCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 20816 0.66 0.496826
Target:  5'- cGGUGAcaAGCuCGaCgGACUGAagGACGACGc -3'
miRNA:   3'- -CCGCU--UCG-GC-GgCUGGCUg-CUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 20956 0.73 0.190629
Target:  5'- aGGCGccacgaaggaacugGAGaCGCUGACgGACGGCGACa -3'
miRNA:   3'- -CCGC--------------UUCgGCGGCUGgCUGCUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 21239 0.67 0.447576
Target:  5'- cGCGcuGCCGCCGACgCGuuCGACcuuGACc -3'
miRNA:   3'- cCGCuuCGGCGGCUG-GCu-GCUG---CUGc -5'
8224 5' -58.6 NC_001978.2 + 22356 0.66 0.486773
Target:  5'- aGGUGAGGCUuCCcgGACCGGucCGGCGuCGg -3'
miRNA:   3'- -CCGCUUCGGcGG--CUGGCU--GCUGCuGC- -5'
8224 5' -58.6 NC_001978.2 + 22442 0.69 0.341562
Target:  5'- cGGCGcuGCCGUucugcacgUGACUGACGA-GACGu -3'
miRNA:   3'- -CCGCuuCGGCG--------GCUGGCUGCUgCUGC- -5'
8224 5' -58.6 NC_001978.2 + 24655 0.67 0.447576
Target:  5'- gGGC-AAGCaCGCCGacacauauGCCGACcAUGACGc -3'
miRNA:   3'- -CCGcUUCG-GCGGC--------UGGCUGcUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 25004 0.66 0.486773
Target:  5'- cGGUccGAAGcCCGCCGACUGAgcCGGguugcCGACu -3'
miRNA:   3'- -CCG--CUUC-GGCGGCUGGCU--GCU-----GCUGc -5'
8224 5' -58.6 NC_001978.2 + 25405 0.68 0.410195
Target:  5'- cGcCGAcuacGCCGCCGACCGGuuCGGgcuCGACGu -3'
miRNA:   3'- cC-GCUu---CGGCGGCUGGCU--GCU---GCUGC- -5'
8224 5' -58.6 NC_001978.2 + 25486 0.71 0.268003
Target:  5'- gGGCGAcGUCGagcCCGaACCGGuCGGCGGCGu -3'
miRNA:   3'- -CCGCUuCGGC---GGC-UGGCU-GCUGCUGC- -5'
8224 5' -58.6 NC_001978.2 + 25797 0.67 0.438052
Target:  5'- cGGCGucauaGCCGACCGAU-ACGGCa -3'
miRNA:   3'- -CCGCuucggCGGCUGGCUGcUGCUGc -5'
8224 5' -58.6 NC_001978.2 + 25919 0.66 0.506973
Target:  5'- cGUGAAGCCGacuCCGGCCGuguCGuugucaccacacACGAUGa -3'
miRNA:   3'- cCGCUUCGGC---GGCUGGCu--GC------------UGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.