miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8225 3' -56.8 NC_001978.2 + 41119 1.11 0.000333
Target:  5'- aCCACGCCACCUAUCAGGCACAGCGCAg -3'
miRNA:   3'- -GGUGCGGUGGAUAGUCCGUGUCGCGU- -5'
8225 3' -56.8 NC_001978.2 + 24459 0.79 0.076089
Target:  5'- gCACGUCGCCcagggCAGGCGCAGCGUc -3'
miRNA:   3'- gGUGCGGUGGaua--GUCCGUGUCGCGu -5'
8225 3' -56.8 NC_001978.2 + 18439 0.79 0.078342
Target:  5'- uUCACGCCAuCCUGg-GGGCAUAGCGCc -3'
miRNA:   3'- -GGUGCGGU-GGAUagUCCGUGUCGCGu -5'
8225 3' -56.8 NC_001978.2 + 14631 0.77 0.101691
Target:  5'- -aGCGCCACC-GUCAGGgGCAGCGaCGu -3'
miRNA:   3'- ggUGCGGUGGaUAGUCCgUGUCGC-GU- -5'
8225 3' -56.8 NC_001978.2 + 10356 0.73 0.212739
Target:  5'- gCCACGCCGCCgccauUCGGGCGCccugaaucauggacuGaGCGCc -3'
miRNA:   3'- -GGUGCGGUGGau---AGUCCGUG---------------U-CGCGu -5'
8225 3' -56.8 NC_001978.2 + 26297 0.72 0.234209
Target:  5'- uUCACGCCAU-----GGGCGCGGCGCu -3'
miRNA:   3'- -GGUGCGGUGgauagUCCGUGUCGCGu -5'
8225 3' -56.8 NC_001978.2 + 40232 0.72 0.239854
Target:  5'- cCCGgGaaGCCUGUUAGGCGCugagacgGGCGCAc -3'
miRNA:   3'- -GGUgCggUGGAUAGUCCGUG-------UCGCGU- -5'
8225 3' -56.8 NC_001978.2 + 37220 0.72 0.240488
Target:  5'- aCGCGCCaugugcgaagACCUAggcaUCGGGCggACGGCGCu -3'
miRNA:   3'- gGUGCGG----------UGGAU----AGUCCG--UGUCGCGu -5'
8225 3' -56.8 NC_001978.2 + 13428 0.72 0.253467
Target:  5'- gCCaAUGCCGCCgucuUCGuuGCACAGCGCGu -3'
miRNA:   3'- -GG-UGCGGUGGau--AGUc-CGUGUCGCGU- -5'
8225 3' -56.8 NC_001978.2 + 31435 0.71 0.260169
Target:  5'- gCCAUggGCCGaagcCCUAUCGGGUGCGGCagGCAa -3'
miRNA:   3'- -GGUG--CGGU----GGAUAGUCCGUGUCG--CGU- -5'
8225 3' -56.8 NC_001978.2 + 7309 0.71 0.267015
Target:  5'- uUCACGCCGCCcgUGUCAGuaACGGUGa- -3'
miRNA:   3'- -GGUGCGGUGG--AUAGUCcgUGUCGCgu -5'
8225 3' -56.8 NC_001978.2 + 38756 0.7 0.295859
Target:  5'- aUCGCGUCcaugACCU-UCAGGCGCgagaAGCGCGa -3'
miRNA:   3'- -GGUGCGG----UGGAuAGUCCGUG----UCGCGU- -5'
8225 3' -56.8 NC_001978.2 + 32368 0.7 0.303439
Target:  5'- -gGCGCCuucgGCUcagUAGGCACGGCGCGu -3'
miRNA:   3'- ggUGCGG----UGGauaGUCCGUGUCGCGU- -5'
8225 3' -56.8 NC_001978.2 + 25952 0.7 0.311167
Target:  5'- aCCGUGCCcggcaagcCCUucgcUCAGGCGCAGCGUg -3'
miRNA:   3'- -GGUGCGGu-------GGAu---AGUCCGUGUCGCGu -5'
8225 3' -56.8 NC_001978.2 + 32191 0.69 0.352035
Target:  5'- aCGCGCgCACCgcUgAGGgAUGGCGCAc -3'
miRNA:   3'- gGUGCG-GUGGauAgUCCgUGUCGCGU- -5'
8225 3' -56.8 NC_001978.2 + 8611 0.69 0.352035
Target:  5'- aUACGCCAUggcgCgaagcAUCgGGGCACGGCGCGa -3'
miRNA:   3'- gGUGCGGUG----Ga----UAG-UCCGUGUCGCGU- -5'
8225 3' -56.8 NC_001978.2 + 22051 0.69 0.387373
Target:  5'- uUCGCGCCgACCU---GGGCAgcgaAGCGCAc -3'
miRNA:   3'- -GGUGCGG-UGGAuagUCCGUg---UCGCGU- -5'
8225 3' -56.8 NC_001978.2 + 38219 0.68 0.396565
Target:  5'- gCCGCGCCacGCCU-UCGGGaCGuCAGCGg- -3'
miRNA:   3'- -GGUGCGG--UGGAuAGUCC-GU-GUCGCgu -5'
8225 3' -56.8 NC_001978.2 + 33954 0.68 0.404019
Target:  5'- aCACGUCGCCguaagggucgucGUCGGcGUACAcGCGCAc -3'
miRNA:   3'- gGUGCGGUGGa-----------UAGUC-CGUGU-CGCGU- -5'
8225 3' -56.8 NC_001978.2 + 14150 0.68 0.415364
Target:  5'- cCCGCcggucgagugGUCGgCUAUCGGGCGCGGCa-- -3'
miRNA:   3'- -GGUG----------CGGUgGAUAGUCCGUGUCGcgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.