Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8225 | 3' | -56.8 | NC_001978.2 | + | 2000 | 0.66 | 0.560171 |
Target: 5'- aCC-CGCuCACCUugCucGCACAGUGCGg -3' miRNA: 3'- -GGuGCG-GUGGAuaGucCGUGUCGCGU- -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 2601 | 0.67 | 0.484169 |
Target: 5'- aCGCGUCguacacgGCCUGaguggCAGGCACcuGCGCGc -3' miRNA: 3'- gGUGCGG-------UGGAUa----GUCCGUGu-CGCGU- -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 7309 | 0.71 | 0.267015 |
Target: 5'- uUCACGCCGCCcgUGUCAGuaACGGUGa- -3' miRNA: 3'- -GGUGCGGUGG--AUAGUCcgUGUCGCgu -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 8611 | 0.69 | 0.352035 |
Target: 5'- aUACGCCAUggcgCgaagcAUCgGGGCACGGCGCGa -3' miRNA: 3'- gGUGCGGUG----Ga----UAG-UCCGUGUCGCGU- -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 10356 | 0.73 | 0.212739 |
Target: 5'- gCCACGCCGCCgccauUCGGGCGCccugaaucauggacuGaGCGCc -3' miRNA: 3'- -GGUGCGGUGGau---AGUCCGUG---------------U-CGCGu -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 13428 | 0.72 | 0.253467 |
Target: 5'- gCCaAUGCCGCCgucuUCGuuGCACAGCGCGu -3' miRNA: 3'- -GG-UGCGGUGGau--AGUc-CGUGUCGCGU- -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 14150 | 0.68 | 0.415364 |
Target: 5'- cCCGCcggucgagugGUCGgCUAUCGGGCGCGGCa-- -3' miRNA: 3'- -GGUG----------CGGUgGAUAGUCCGUGUCGcgu -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 14631 | 0.77 | 0.101691 |
Target: 5'- -aGCGCCACC-GUCAGGgGCAGCGaCGu -3' miRNA: 3'- ggUGCGGUGGaUAGUCCgUGUCGC-GU- -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 18439 | 0.79 | 0.078342 |
Target: 5'- uUCACGCCAuCCUGg-GGGCAUAGCGCc -3' miRNA: 3'- -GGUGCGGU-GGAUagUCCGUGUCGCGu -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 19406 | 0.67 | 0.485207 |
Target: 5'- uCCuuGCCGCUg---AGGCGgAGCGCGa -3' miRNA: 3'- -GGugCGGUGGauagUCCGUgUCGCGU- -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 22051 | 0.69 | 0.387373 |
Target: 5'- uUCGCGCCgACCU---GGGCAgcgaAGCGCAc -3' miRNA: 3'- -GGUGCGG-UGGAuagUCCGUg---UCGCGU- -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 23979 | 0.67 | 0.474874 |
Target: 5'- gCACGCuCAC---UCA-GCACAGCGCGa -3' miRNA: 3'- gGUGCG-GUGgauAGUcCGUGUCGCGU- -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 24232 | 0.67 | 0.454547 |
Target: 5'- aCACGCaCGCCUGUU--GCGCAGCa-- -3' miRNA: 3'- gGUGCG-GUGGAUAGucCGUGUCGcgu -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 24459 | 0.79 | 0.076089 |
Target: 5'- gCACGUCGCCcagggCAGGCGCAGCGUc -3' miRNA: 3'- gGUGCGGUGGaua--GUCCGUGUCGCGu -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 24566 | 0.66 | 0.516819 |
Target: 5'- aCGCGCC-CCggGUUAuGGCGuugcuCAGCGCGu -3' miRNA: 3'- gGUGCGGuGGa-UAGU-CCGU-----GUCGCGU- -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 25410 | 0.67 | 0.461609 |
Target: 5'- aCUACGCCGCCgaccgguUCGGGCucgacgucgcccagGCugaGGCGCu -3' miRNA: 3'- -GGUGCGGUGGau-----AGUCCG--------------UG---UCGCGu -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 25952 | 0.7 | 0.311167 |
Target: 5'- aCCGUGCCcggcaagcCCUucgcUCAGGCGCAGCGUg -3' miRNA: 3'- -GGUGCGGu-------GGAu---AGUCCGUGUCGCGu -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 26297 | 0.72 | 0.234209 |
Target: 5'- uUCACGCCAU-----GGGCGCGGCGCu -3' miRNA: 3'- -GGUGCGGUGgauagUCCGUGUCGCGu -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 31236 | 0.66 | 0.560171 |
Target: 5'- gCCAcacCGUCACCacUCAGcGCGuCGGCGCc -3' miRNA: 3'- -GGU---GCGGUGGauAGUC-CGU-GUCGCGu -5' |
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8225 | 3' | -56.8 | NC_001978.2 | + | 31435 | 0.71 | 0.260169 |
Target: 5'- gCCAUggGCCGaagcCCUAUCGGGUGCGGCagGCAa -3' miRNA: 3'- -GGUG--CGGU----GGAUAGUCCGUGUCG--CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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