miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8438 3' -54.6 NC_002166.1 + 7078 0.66 0.650447
Target:  5'- cGCUGCGGgaUGCCAuUGAgCCGcacgCGCa -3'
miRNA:   3'- -CGACGUCg-ACGGU-ACU-GGCcuaaGCG- -5'
8438 3' -54.6 NC_002166.1 + 2157 0.66 0.6391
Target:  5'- aCUGCAGCcuUGCCcaccaGCCGuuauuGGUUCGCa -3'
miRNA:   3'- cGACGUCG--ACGGuac--UGGC-----CUAAGCG- -5'
8438 3' -54.6 NC_002166.1 + 10176 0.66 0.627747
Target:  5'- cGCUGCAGuCUGaCUggGUGACUGG---CGCc -3'
miRNA:   3'- -CGACGUC-GAC-GG--UACUGGCCuaaGCG- -5'
8438 3' -54.6 NC_002166.1 + 5972 0.67 0.608461
Target:  5'- uCUGCAGUUucaucuaguucaccaGCCAgcGACUGGAUaaugacaUCGCa -3'
miRNA:   3'- cGACGUCGA---------------CGGUa-CUGGCCUA-------AGCG- -5'
8438 3' -54.6 NC_002166.1 + 13321 0.67 0.582478
Target:  5'- aCUGCuGCUGUguUGACUGGAccCGg -3'
miRNA:   3'- cGACGuCGACGguACUGGCCUaaGCg -5'
8438 3' -54.6 NC_002166.1 + 25622 0.67 0.571246
Target:  5'- uGCaaggGCGGUUGCUguAUGACUGuuUUCGCc -3'
miRNA:   3'- -CGa---CGUCGACGG--UACUGGCcuAAGCG- -5'
8438 3' -54.6 NC_002166.1 + 17433 0.68 0.537904
Target:  5'- cGCUGUuaccGGCUGCCGUGGugaCGGcgaaGCg -3'
miRNA:   3'- -CGACG----UCGACGGUACUg--GCCuaagCG- -5'
8438 3' -54.6 NC_002166.1 + 12141 0.71 0.375709
Target:  5'- -aUGCAGCUGCUgagGACUGGGguacggugaUCGCc -3'
miRNA:   3'- cgACGUCGACGGua-CUGGCCUa--------AGCG- -5'
8438 3' -54.6 NC_002166.1 + 13356 0.74 0.249889
Target:  5'- cGCUGCuuucGCUGCUGguggauUGACgGGGUUUGCu -3'
miRNA:   3'- -CGACGu---CGACGGU------ACUGgCCUAAGCG- -5'
8438 3' -54.6 NC_002166.1 + 21264 0.78 0.135684
Target:  5'- uGCUGUgcgGGUUGCUGUuACCGGAUUCGUa -3'
miRNA:   3'- -CGACG---UCGACGGUAcUGGCCUAAGCG- -5'
8438 3' -54.6 NC_002166.1 + 8601 1.15 0.000277
Target:  5'- cGCUGCAGCUGCCAUGACCGGAUUCGCa -3'
miRNA:   3'- -CGACGUCGACGGUACUGGCCUAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.