miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8476 3' -38.9 NC_002167.1 + 282 0.67 0.999999
Target:  5'- aUUUACG-CAAAGAAg-AGCGCAu-- -3'
miRNA:   3'- aAAAUGCuGUUUUUUaaUCGCGUucu -5'
8476 3' -38.9 NC_002167.1 + 12851 0.67 0.999998
Target:  5'- -gUUGCGGCGugg---UGGCGCA-GAa -3'
miRNA:   3'- aaAAUGCUGUuuuuuaAUCGCGUuCU- -5'
8476 3' -38.9 NC_002167.1 + 31830 0.67 0.999996
Target:  5'- --aUAUGACGAGAAcagUAGCGCc--- -3'
miRNA:   3'- aaaAUGCUGUUUUUua-AUCGCGuucu -5'
8476 3' -38.9 NC_002167.1 + 24796 0.67 0.999994
Target:  5'- --aUAUGAgCAAAGAAUUuuaCGCAAGAc -3'
miRNA:   3'- aaaAUGCU-GUUUUUUAAuc-GCGUUCU- -5'
8476 3' -38.9 NC_002167.1 + 5687 0.68 0.999987
Target:  5'- ---gGCGGCGcgGAAacGGCGCAGGc -3'
miRNA:   3'- aaaaUGCUGUuuUUUaaUCGCGUUCu -5'
8476 3' -38.9 NC_002167.1 + 36134 0.69 0.999889
Target:  5'- ---aACGGCAuGAGguuGUUAGCGCAAc- -3'
miRNA:   3'- aaaaUGCUGUuUUU---UAAUCGCGUUcu -5'
8476 3' -38.9 NC_002167.1 + 35493 0.7 0.999848
Target:  5'- ---cGCGACGccg----GGCGCAAGAu -3'
miRNA:   3'- aaaaUGCUGUuuuuuaaUCGCGUUCU- -5'
8476 3' -38.9 NC_002167.1 + 9759 0.72 0.998338
Target:  5'- ---aACGACAAAAGAcccgUAGCGCcAGu -3'
miRNA:   3'- aaaaUGCUGUUUUUUa---AUCGCGuUCu -5'
8476 3' -38.9 NC_002167.1 + 2675 0.73 0.99743
Target:  5'- -gUUGCGAUGGAGGAccAGCaGCGAGAu -3'
miRNA:   3'- aaAAUGCUGUUUUUUaaUCG-CGUUCU- -5'
8476 3' -38.9 NC_002167.1 + 32273 0.74 0.99437
Target:  5'- ---aGCGGCGu--GGUUAGCGCAguAGAu -3'
miRNA:   3'- aaaaUGCUGUuuuUUAAUCGCGU--UCU- -5'
8476 3' -38.9 NC_002167.1 + 21111 0.8 0.891685
Target:  5'- -----aGACAGAGcAUUAGCGCAAGGu -3'
miRNA:   3'- aaaaugCUGUUUUuUAAUCGCGUUCU- -5'
8476 3' -38.9 NC_002167.1 + 19501 0.83 0.778713
Target:  5'- --gUACGACGAGAAcAUUGGCGCGugGGAg -3'
miRNA:   3'- aaaAUGCUGUUUUU-UAAUCGCGU--UCU- -5'
8476 3' -38.9 NC_002167.1 + 21013 1.1 0.034113
Target:  5'- aUUUUACGACAAAAAAUUAGCGCAAGAa -3'
miRNA:   3'- -AAAAUGCUGUUUUUUAAUCGCGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.