Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8481 | 5' | -54 | NC_002169.1 | + | 2938 | 1.13 | 0.002444 |
Target: 5'- gUGCCGUCGAGACACGACUCUUGACCCa -3' miRNA: 3'- -ACGGCAGCUCUGUGCUGAGAACUGGG- -5' |
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8481 | 5' | -54 | NC_002169.1 | + | 26725 | 0.7 | 0.791581 |
Target: 5'- cUGUCGUCGAGuauGCACGACacgUUU-ACCCa -3' miRNA: 3'- -ACGGCAGCUC---UGUGCUGa--GAAcUGGG- -5' |
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8481 | 5' | -54 | NC_002169.1 | + | 28845 | 0.66 | 0.945516 |
Target: 5'- uUGCaacaGUCGA-ACGCGACUU-UGGCCa -3' miRNA: 3'- -ACGg---CAGCUcUGUGCUGAGaACUGGg -5' |
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8481 | 5' | -54 | NC_002169.1 | + | 30845 | 0.71 | 0.74402 |
Target: 5'- cGCgGUCGcGACACGACaCgUUGGCCg -3' miRNA: 3'- aCGgCAGCuCUGUGCUGaG-AACUGGg -5' |
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8481 | 5' | -54 | NC_002169.1 | + | 33029 | 0.76 | 0.481235 |
Target: 5'- cGUCGUCGAcaaacuuauCACGACUCUUGuauCCCa -3' miRNA: 3'- aCGGCAGCUcu-------GUGCUGAGAACu--GGG- -5' |
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8481 | 5' | -54 | NC_002169.1 | + | 34520 | 0.67 | 0.925765 |
Target: 5'- cGCCGUCGccGAUAUuGACUCUaaUGACg- -3' miRNA: 3'- aCGGCAGCu-CUGUG-CUGAGA--ACUGgg -5' |
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8481 | 5' | -54 | NC_002169.1 | + | 34852 | 0.68 | 0.90778 |
Target: 5'- aGgCGUCGAG-CGCGgggauguggccguACUCgacGACCCa -3' miRNA: 3'- aCgGCAGCUCuGUGC-------------UGAGaa-CUGGG- -5' |
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8481 | 5' | -54 | NC_002169.1 | + | 35987 | 0.68 | 0.902124 |
Target: 5'- cUGCCGUCG-GGCAU--CUCUUcGuCCCa -3' miRNA: 3'- -ACGGCAGCuCUGUGcuGAGAA-CuGGG- -5' |
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8481 | 5' | -54 | NC_002169.1 | + | 36933 | 0.66 | 0.945516 |
Target: 5'- aGCCGaCGGGGCuuuCGGCgag-GAUCCa -3' miRNA: 3'- aCGGCaGCUCUGu--GCUGagaaCUGGG- -5' |
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8481 | 5' | -54 | NC_002169.1 | + | 42945 | 0.7 | 0.791581 |
Target: 5'- aGCgUGUCGAGcgcuaGCACGGCUUgcggcaggaUGGCCCg -3' miRNA: 3'- aCG-GCAGCUC-----UGUGCUGAGa--------ACUGGG- -5' |
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8481 | 5' | -54 | NC_002169.1 | + | 43316 | 0.66 | 0.961458 |
Target: 5'- cGUCGUUGAccaucGACACGguGCUCUUGAa-- -3' miRNA: 3'- aCGGCAGCU-----CUGUGC--UGAGAACUggg -5' |
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8481 | 5' | -54 | NC_002169.1 | + | 45636 | 0.68 | 0.908396 |
Target: 5'- aGCgG-CGAGACGCGugUCga-GCUCg -3' miRNA: 3'- aCGgCaGCUCUGUGCugAGaacUGGG- -5' |
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8481 | 5' | -54 | NC_002169.1 | + | 51920 | 0.68 | 0.888869 |
Target: 5'- cGCUGaUUGAGACGCGAag--UGGCCa -3' miRNA: 3'- aCGGC-AGCUCUGUGCUgagaACUGGg -5' |
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8481 | 5' | -54 | NC_002169.1 | + | 54109 | 0.67 | 0.940942 |
Target: 5'- gUGCCGUCccgcuGGCcaagaGACUUUUGGCCa -3' miRNA: 3'- -ACGGCAGcu---CUGug---CUGAGAACUGGg -5' |
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8481 | 5' | -54 | NC_002169.1 | + | 85629 | 0.67 | 0.931067 |
Target: 5'- cGCCGU-GAGAaauuggaaaacgUACGACU--UGGCCCc -3' miRNA: 3'- aCGGCAgCUCU------------GUGCUGAgaACUGGG- -5' |
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8481 | 5' | -54 | NC_002169.1 | + | 88659 | 0.72 | 0.734171 |
Target: 5'- cUGUCGUCGAGAguCGCGAU--UUGugCCu -3' miRNA: 3'- -ACGGCAGCUCU--GUGCUGagAACugGG- -5' |
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8481 | 5' | -54 | NC_002169.1 | + | 88900 | 0.71 | 0.781392 |
Target: 5'- aGCCugggauuGUUGAGACACG-CUCgucUGugCCg -3' miRNA: 3'- aCGG-------CAGCUCUGUGCuGAGa--ACugGG- -5' |
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8481 | 5' | -54 | NC_002169.1 | + | 90814 | 0.66 | 0.949852 |
Target: 5'- cUGuuGUCGAGGCAUuuuugaGcACUCUUGaAUCUa -3' miRNA: 3'- -ACggCAGCUCUGUG------C-UGAGAAC-UGGG- -5' |
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8481 | 5' | -54 | NC_002169.1 | + | 92780 | 0.66 | 0.956683 |
Target: 5'- aUGUCcUCGAGcgucuugagaccgcACGCGACgcugUGGCCCa -3' miRNA: 3'- -ACGGcAGCUC--------------UGUGCUGaga-ACUGGG- -5' |
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8481 | 5' | -54 | NC_002169.1 | + | 96508 | 0.66 | 0.957819 |
Target: 5'- aGCUGUUGAagaagacccgcGACGCG-CUCUUG-CCg -3' miRNA: 3'- aCGGCAGCU-----------CUGUGCuGAGAACuGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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