Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8482 | 5' | -53.8 | NC_002169.1 | + | 99394 | 0.84 | 0.168271 |
Target: 5'- cACCacaGAUACCGACACUGACACUGAa- -3' miRNA: 3'- aUGG---CUGUGGCUGUGACUGUGACUgc -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 89641 | 0.66 | 0.958563 |
Target: 5'- cAgCGGCGCCGuaaccaccacuguuuGCGgUGuCGCUGACGa -3' miRNA: 3'- aUgGCUGUGGC---------------UGUgACuGUGACUGC- -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 82550 | 0.67 | 0.93486 |
Target: 5'- gGCCGACAUgucaaaguUGACuCUGACGCgcaugcgGGCGu -3' miRNA: 3'- aUGGCUGUG--------GCUGuGACUGUGa------CUGC- -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 61508 | 0.67 | 0.918593 |
Target: 5'- cACCGuCGCCGAUcuaauACUcaacGACACgGACGa -3' miRNA: 3'- aUGGCuGUGGCUG-----UGA----CUGUGaCUGC- -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 1536 | 0.67 | 0.918593 |
Target: 5'- cUAUUGACGuuGACAUuggUGGCGgUGGCGg -3' miRNA: 3'- -AUGGCUGUggCUGUG---ACUGUgACUGC- -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 56592 | 0.68 | 0.900098 |
Target: 5'- cAUCGACGCCGAUcucguaaacGCgGGCGCcGGCGu -3' miRNA: 3'- aUGGCUGUGGCUG---------UGaCUGUGaCUGC- -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 99866 | 0.68 | 0.886557 |
Target: 5'- -uCCGACGaugaCGACAUUGACGaguaUGAUGa -3' miRNA: 3'- auGGCUGUg---GCUGUGACUGUg---ACUGC- -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 15834 | 0.7 | 0.805762 |
Target: 5'- gACCGcCGCCGACGCUGcCGCaauGCGu -3' miRNA: 3'- aUGGCuGUGGCUGUGACuGUGac-UGC- -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 120407 | 0.7 | 0.796648 |
Target: 5'- aAUCGAUGuuGAUGUUGGCGCUGACGa -3' miRNA: 3'- aUGGCUGUggCUGUGACUGUGACUGC- -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 75461 | 0.71 | 0.739048 |
Target: 5'- cACCGACGaagaCGAUAgaGACGgUGACGa -3' miRNA: 3'- aUGGCUGUg---GCUGUgaCUGUgACUGC- -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 61843 | 0.71 | 0.729051 |
Target: 5'- cGCCGAUcCCGACGgacacauuaauCUGuCGCUGGCGa -3' miRNA: 3'- aUGGCUGuGGCUGU-----------GACuGUGACUGC- -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 90235 | 0.72 | 0.688291 |
Target: 5'- cGCCGugGuCUGACgACUaucGGCGCUGACGa -3' miRNA: 3'- aUGGCugU-GGCUG-UGA---CUGUGACUGC- -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 68647 | 0.72 | 0.688291 |
Target: 5'- cGCCGGUACCGGCAUUccCACUGACu -3' miRNA: 3'- aUGGCUGUGGCUGUGAcuGUGACUGc -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 34520 | 0.74 | 0.563612 |
Target: 5'- cGCCGuCGCCGAUAUUGACucuaaUGACGu -3' miRNA: 3'- aUGGCuGUGGCUGUGACUGug---ACUGC- -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 129976 | 0.67 | 0.924264 |
Target: 5'- aGCgCGACGCgCGACAUUGucgcCAUUGugGu -3' miRNA: 3'- aUG-GCUGUG-GCUGUGACu---GUGACugC- -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 112939 | 0.67 | 0.929686 |
Target: 5'- aACCGACuacgaCGACGCcGACAUUG-CGu -3' miRNA: 3'- aUGGCUGug---GCUGUGaCUGUGACuGC- -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 97067 | 0.67 | 0.929686 |
Target: 5'- cUGCCGACGgugucgaCGACGCUGcCGgUGAUGc -3' miRNA: 3'- -AUGGCUGUg------GCUGUGACuGUgACUGC- -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 41530 | 0.66 | 0.944464 |
Target: 5'- aUACuCGACugCGGCA-UGAUACUGucCGa -3' miRNA: 3'- -AUG-GCUGugGCUGUgACUGUGACu-GC- -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 26353 | 0.66 | 0.944464 |
Target: 5'- cGCCGGCGacgUCGuuGCGCUGcCAuCUGACGa -3' miRNA: 3'- aUGGCUGU---GGC--UGUGACuGU-GACUGC- -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 4598 | 1.08 | 0.00486 |
Target: 5'- aUACCGACACCGACACUGACACUGACGa -3' miRNA: 3'- -AUGGCUGUGGCUGUGACUGUGACUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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