miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8482 5' -53.8 NC_002169.1 + 4598 1.08 0.00486
Target:  5'- aUACCGACACCGACACUGACACUGACGa -3'
miRNA:   3'- -AUGGCUGUGGCUGUGACUGUGACUGC- -5'
8482 5' -53.8 NC_002169.1 + 99394 0.84 0.168271
Target:  5'- cACCacaGAUACCGACACUGACACUGAa- -3'
miRNA:   3'- aUGG---CUGUGGCUGUGACUGUGACUgc -5'
8482 5' -53.8 NC_002169.1 + 34520 0.74 0.563612
Target:  5'- cGCCGuCGCCGAUAUUGACucuaaUGACGu -3'
miRNA:   3'- aUGGCuGUGGCUGUGACUGug---ACUGC- -5'
8482 5' -53.8 NC_002169.1 + 68647 0.72 0.688291
Target:  5'- cGCCGGUACCGGCAUUccCACUGACu -3'
miRNA:   3'- aUGGCUGUGGCUGUGAcuGUGACUGc -5'
8482 5' -53.8 NC_002169.1 + 90235 0.72 0.688291
Target:  5'- cGCCGugGuCUGACgACUaucGGCGCUGACGa -3'
miRNA:   3'- aUGGCugU-GGCUG-UGA---CUGUGACUGC- -5'
8482 5' -53.8 NC_002169.1 + 61843 0.71 0.729051
Target:  5'- cGCCGAUcCCGACGgacacauuaauCUGuCGCUGGCGa -3'
miRNA:   3'- aUGGCUGuGGCUGU-----------GACuGUGACUGC- -5'
8482 5' -53.8 NC_002169.1 + 75461 0.71 0.739048
Target:  5'- cACCGACGaagaCGAUAgaGACGgUGACGa -3'
miRNA:   3'- aUGGCUGUg---GCUGUgaCUGUgACUGC- -5'
8482 5' -53.8 NC_002169.1 + 120407 0.7 0.796648
Target:  5'- aAUCGAUGuuGAUGUUGGCGCUGACGa -3'
miRNA:   3'- aUGGCUGUggCUGUGACUGUGACUGC- -5'
8482 5' -53.8 NC_002169.1 + 15834 0.7 0.805762
Target:  5'- gACCGcCGCCGACGCUGcCGCaauGCGu -3'
miRNA:   3'- aUGGCuGUGGCUGUGACuGUGac-UGC- -5'
8482 5' -53.8 NC_002169.1 + 14021 0.69 0.848704
Target:  5'- aUGCCcACGCCGGCGCgcaACAC-GACGg -3'
miRNA:   3'- -AUGGcUGUGGCUGUGac-UGUGaCUGC- -5'
8482 5' -53.8 NC_002169.1 + 104777 0.69 0.856709
Target:  5'- cGCCGACGuuGuucguuuuGCugUGACAUUGAUa -3'
miRNA:   3'- aUGGCUGUggC--------UGugACUGUGACUGc -5'
8482 5' -53.8 NC_002169.1 + 35588 0.69 0.864504
Target:  5'- aUAUCGGCACCGACA--GACACUugGAUu -3'
miRNA:   3'- -AUGGCUGUGGCUGUgaCUGUGA--CUGc -5'
8482 5' -53.8 NC_002169.1 + 99866 0.68 0.886557
Target:  5'- -uCCGACGaugaCGACAUUGACGaguaUGAUGa -3'
miRNA:   3'- auGGCUGUg---GCUGUGACUGUg---ACUGC- -5'
8482 5' -53.8 NC_002169.1 + 56592 0.68 0.900098
Target:  5'- cAUCGACGCCGAUcucguaaacGCgGGCGCcGGCGu -3'
miRNA:   3'- aUGGCUGUGGCUG---------UGaCUGUGaCUGC- -5'
8482 5' -53.8 NC_002169.1 + 79968 0.67 0.915071
Target:  5'- aGCCGAgAuggcgggcggccucuUCGACGCUGcCGCUGGCc -3'
miRNA:   3'- aUGGCUgU---------------GGCUGUGACuGUGACUGc -5'
8482 5' -53.8 NC_002169.1 + 45407 0.67 0.918593
Target:  5'- cGCCGGCGCCGAaaCGCuUGuauuCGCcGACGc -3'
miRNA:   3'- aUGGCUGUGGCU--GUG-ACu---GUGaCUGC- -5'
8482 5' -53.8 NC_002169.1 + 37973 0.67 0.918593
Target:  5'- cGCCGGaguaGACAaacUUGACGCUGACGu -3'
miRNA:   3'- aUGGCUguggCUGU---GACUGUGACUGC- -5'
8482 5' -53.8 NC_002169.1 + 14362 0.67 0.918593
Target:  5'- aAUCGAUACCGAUGCUGGaaaacCACgaaGACa -3'
miRNA:   3'- aUGGCUGUGGCUGUGACU-----GUGa--CUGc -5'
8482 5' -53.8 NC_002169.1 + 61508 0.67 0.918593
Target:  5'- cACCGuCGCCGAUcuaauACUcaacGACACgGACGa -3'
miRNA:   3'- aUGGCuGUGGCUG-----UGA----CUGUGaCUGC- -5'
8482 5' -53.8 NC_002169.1 + 1536 0.67 0.918593
Target:  5'- cUAUUGACGuuGACAUuggUGGCGgUGGCGg -3'
miRNA:   3'- -AUGGCUGUggCUGUG---ACUGUgACUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.