Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8482 | 5' | -53.8 | NC_002169.1 | + | 129976 | 0.67 | 0.924264 |
Target: 5'- aGCgCGACGCgCGACAUUGucgcCAUUGugGu -3' miRNA: 3'- aUG-GCUGUG-GCUGUGACu---GUGACugC- -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 99903 | 0.67 | 0.924264 |
Target: 5'- uUGCCGACGCCuuGAUcaaAC-GACACUGAa- -3' miRNA: 3'- -AUGGCUGUGG--CUG---UGaCUGUGACUgc -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 112939 | 0.67 | 0.929686 |
Target: 5'- aACCGACuacgaCGACGCcGACAUUG-CGu -3' miRNA: 3'- aUGGCUGug---GCUGUGaCUGUGACuGC- -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 97067 | 0.67 | 0.929686 |
Target: 5'- cUGCCGACGgugucgaCGACGCUGcCGgUGAUGc -3' miRNA: 3'- -AUGGCUGUg------GCUGUGACuGUgACUGC- -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 82550 | 0.67 | 0.93486 |
Target: 5'- gGCCGACAUgucaaaguUGACuCUGACGCgcaugcgGGCGu -3' miRNA: 3'- aUGGCUGUG--------GCUGuGACUGUGa------CUGC- -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 41530 | 0.66 | 0.944464 |
Target: 5'- aUACuCGACugCGGCA-UGAUACUGucCGa -3' miRNA: 3'- -AUG-GCUGugGCUGUgACUGUGACu-GC- -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 26353 | 0.66 | 0.944464 |
Target: 5'- cGCCGGCGacgUCGuuGCGCUGcCAuCUGACGa -3' miRNA: 3'- aUGGCUGU---GGC--UGUGACuGU-GACUGC- -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 53627 | 0.66 | 0.948899 |
Target: 5'- cACCGGCGgCGGCGacgacCUGAUACUuGGCc -3' miRNA: 3'- aUGGCUGUgGCUGU-----GACUGUGA-CUGc -5' |
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8482 | 5' | -53.8 | NC_002169.1 | + | 89641 | 0.66 | 0.958563 |
Target: 5'- cAgCGGCGCCGuaaccaccacuguuuGCGgUGuCGCUGACGa -3' miRNA: 3'- aUgGCUGUGGC---------------UGUgACuGUGACUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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