miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8485 3' -40.7 NC_002169.1 + 120230 0.83 0.913463
Target:  5'- ----aUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaucAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11230 1.07 0.093428
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUCAUGUACUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 119796 0.96 0.34107
Target:  5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11761 0.8 0.961952
Target:  5'- ----aUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105287 1 0.226992
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- aaAUCAUGUACUAGAAACGAAAGUAg -5'
8485 3' -40.7 NC_002169.1 + 10904 1.1 0.066536
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUCAUGUACUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 71829 1.05 0.1228
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGUACUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 10713 0.78 0.987305
Target:  5'- uUUUAGUACAcaAUgUUUGCUUUCAUCu -3'
miRNA:   3'- -AAAUCAUGUacUAgAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105514 0.78 0.990502
Target:  5'- --cGGUACAUcAUgUUUGCUUUCAUCc -3'
miRNA:   3'- aaaUCAUGUAcUAgAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 42065 0.9 0.606345
Target:  5'- aUUUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGuaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 42192 0.95 0.38733
Target:  5'- -aUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105091 1 0.214491
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 119325 0.73 0.99968
Target:  5'- -aUAG-AC--GAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCaUGuaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11281 0.75 0.998685
Target:  5'- aUUUAaUACAcaAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUcAUGUacUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105202 0.75 0.998011
Target:  5'- uUUUAaUACAcGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- -AAAUcAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 10520 0.76 0.995786
Target:  5'- -----cACAacGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaaucaUGUa-CUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11173 0.83 0.913463
Target:  5'- ----aUGCAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaucAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 119602 0.94 0.437533
Target:  5'- --cAGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUCAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 41999 0.93 0.448015
Target:  5'- --cAGUACAcGAUCUUUGCUUUCAUCu -3'
miRNA:   3'- aaaUCAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 52898 0.93 0.448015
Target:  5'- uUUUAGUACAUcAUCUUUGCUUUCAUCc -3'
miRNA:   3'- -AAAUCAUGUAcUAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.