miRNA display CGI


Results 1 - 20 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8485 3' -40.7 NC_002169.1 + 42376 0.68 1
Target:  5'- -----cACA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucaUGUacUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 119518 0.95 0.38733
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUUAUCg -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 119796 0.96 0.34107
Target:  5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 119616 1.11 0.058744
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUCAUGUACUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105600 0.72 0.999958
Target:  5'- ----aUACAcaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaucAUGUacUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 104956 0.73 0.999858
Target:  5'- -aUAGU-CA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAuGUacUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105514 0.78 0.990502
Target:  5'- --cGGUACAUcAUgUUUGCUUUCAUCc -3'
miRNA:   3'- aaaUCAUGUAcUAgAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 10713 0.78 0.987305
Target:  5'- uUUUAGUACAcaAUgUUUGCUUUCAUCu -3'
miRNA:   3'- -AAAUCAUGUacUAgAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 42065 0.9 0.606345
Target:  5'- aUUUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGuaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 42192 0.95 0.38733
Target:  5'- -aUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 52978 0.91 0.536357
Target:  5'- uUUUAGUACAccAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUCAUGUacUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 120230 0.83 0.913463
Target:  5'- ----aUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaucAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 42453 0.7 0.999999
Target:  5'- --aAGUcaaACAcaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCA---UGUacUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105145 0.91 0.536357
Target:  5'- -----cACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaaucaUGUACUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 53091 0.7 0.999995
Target:  5'- ----aUACucaAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaaucAUGuacUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11761 0.8 0.961952
Target:  5'- ----aUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11366 0.93 0.469387
Target:  5'- uUUUAaUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUcAUGUACUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11132 0.95 0.377754
Target:  5'- gUUUAaUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUcAUGUACUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105690 0.71 0.99997
Target:  5'- ----aUACAcGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- aaaucAUGUaCUAGAAACGAAAGuAG- -5'
8485 3' -40.7 NC_002169.1 + 105039 0.73 0.99968
Target:  5'- -aUAuUGCAUcagccuacucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUcAUGUA----------CUAGAAACGAAAGUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.