miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8485 3' -40.7 NC_002169.1 + 10326 0.69 1
Target:  5'- ---cGUACAUGAacaaagcaUCUUUGUcaUCGUCa -3'
miRNA:   3'- aaauCAUGUACU--------AGAAACGaaAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 10520 0.76 0.995786
Target:  5'- -----cACAacGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaaucaUGUa-CUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 10709 0.87 0.746273
Target:  5'- -cUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGuaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 10713 0.78 0.987305
Target:  5'- uUUUAGUACAcaAUgUUUGCUUUCAUCu -3'
miRNA:   3'- -AAAUCAUGUacUAgAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 10817 0.86 0.768375
Target:  5'- -cUAGUACAcGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUCAUGUaCUAgAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 10904 1.1 0.066536
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUCAUGUACUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 10935 0.96 0.34107
Target:  5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11012 1.11 0.058744
Target:  5'- gUUUAGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUCAUGUACUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11036 0.87 0.746273
Target:  5'- -cUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGuaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11132 0.95 0.377754
Target:  5'- gUUUAaUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUcAUGUACUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11173 0.83 0.913463
Target:  5'- ----aUGCAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaucAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11230 1.07 0.093428
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUCAUGUACUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11281 0.75 0.998685
Target:  5'- aUUUAaUACAcaAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUcAUGUacUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11366 0.93 0.469387
Target:  5'- uUUUAaUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUcAUGUACUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11442 0.95 0.38733
Target:  5'- -aUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11477 0.97 0.307033
Target:  5'- -aUAGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUCAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11570 0.9 0.594554
Target:  5'- -cUAGUACucGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaAUCAUGuaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11636 0.98 0.275656
Target:  5'- -cUAGUACAUGAUgUUUGCUUUCAUCg -3'
miRNA:   3'- aaAUCAUGUACUAgAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11704 0.72 0.999921
Target:  5'- aUUUGGUugAUGAUCUUcauuugaggaUGaUUUCAUCg -3'
miRNA:   3'- -AAAUCAugUACUAGAA----------ACgAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11761 0.8 0.961952
Target:  5'- ----aUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucAUGUaCUAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.