miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8485 3' -40.7 NC_002169.1 + 10709 0.87 0.746273
Target:  5'- -cUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGuaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 119602 0.94 0.437533
Target:  5'- --cAGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUCAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 41999 0.93 0.448015
Target:  5'- --cAGUACAcGAUCUUUGCUUUCAUCu -3'
miRNA:   3'- aaaUCAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 52898 0.93 0.448015
Target:  5'- uUUUAGUACAUcAUCUUUGCUUUCAUCc -3'
miRNA:   3'- -AAAUCAUGUAcUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 104769 0.93 0.458634
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- aaaucAUGUACUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 52784 0.91 0.536357
Target:  5'- --cGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105501 0.91 0.536357
Target:  5'- --cAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11570 0.9 0.594554
Target:  5'- -cUAGUACucGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaAUCAUGuaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 52662 0.9 0.594554
Target:  5'- uUUUAGUACAcGAUgUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUCAUGUaCUAgAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 71637 0.95 0.397065
Target:  5'- --cAGUACAcGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaaUCAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11442 0.95 0.38733
Target:  5'- -aUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 10935 0.96 0.34107
Target:  5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 104833 1.11 0.058744
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUCAUGUACUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 42188 1.08 0.08012
Target:  5'- -gUAGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaAUCAUGUACUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 53042 1.08 0.082628
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaAUCAUGUACUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 53123 1.04 0.134367
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUCAUGUACUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 104956 1.02 0.175308
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUACUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105091 1 0.214491
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 119418 0.97 0.307033
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 120037 0.97 0.307033
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.