miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8485 5' -45.6 NC_002169.1 + 11332 0.82 0.696527
Target:  5'- gUCGACGAAAGCAAAgAUCGUGcauuuCUGc -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCACau---GAU- -5'
8485 5' -45.6 NC_002169.1 + 11196 0.82 0.663376
Target:  5'- -gGACGAAAGCAAAgAUCGaGUACUAg -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCaCAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 104927 0.82 0.65225
Target:  5'- gUCGACGAAAGCAAAgAUCaUGUAUUGa -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 105376 0.83 0.629954
Target:  5'- gUCGACGAucuuggacaaAAGCAAAgAUCGUGUAUUAa -3'
miRNA:   3'- -AGCUGCU----------UUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 42350 0.83 0.607664
Target:  5'- cUCGAUGAAAGCAAAgAUCaUGUACUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 10849 0.84 0.563418
Target:  5'- gUCGAUGAAAGCAAAgAUCaUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 119452 0.84 0.563418
Target:  5'- uUCGAUGAAAGCAAAgAUCaUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 42419 0.84 0.563418
Target:  5'- gUCGAUGAAAGCAAAgAUCaUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 53204 0.84 0.563418
Target:  5'- gUCGAUGAAAGCAAAgAUCaUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 104997 0.84 0.563418
Target:  5'- uUCGAUGAAAGCAAAgAUCaUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 105569 0.84 0.552478
Target:  5'- -gGAUGAAAGCAAAgAUCGUGUAUUAa -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 119354 0.85 0.541603
Target:  5'- uUCGAUaAAAGCAAAgAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGcUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 11732 0.85 0.498893
Target:  5'- gUCGAUGAAAGCAAAgAUCGaGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCaCAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 11096 0.86 0.457748
Target:  5'- -gGACGAAAGCAAAgAUCGUGUACc- -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACAUGau -5'
8485 5' -45.6 NC_002169.1 + 52942 0.86 0.457748
Target:  5'- -gGACGAAAGCAAAgAUCGUGUACc- -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACAUGau -5'
8485 5' -45.6 NC_002169.1 + 119635 0.86 0.457748
Target:  5'- -gGACGAAAGCAAAgAUCGUGUACc- -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACAUGau -5'
8485 5' -45.6 NC_002169.1 + 11445 0.87 0.428113
Target:  5'- gUCGAUGAAAGCAAAgAUUGUGUAUUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 105441 0.87 0.418489
Target:  5'- uUCGACGAAAGCAAAgAUUGUGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCACAUGau -5'
8485 5' -45.6 NC_002169.1 + 53284 0.87 0.408998
Target:  5'- gUCGACGAAAGCAAAgAUCaUGUACUGa -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 42031 0.88 0.399642
Target:  5'- cUCGAUGAAAGCAAAgAUCGUGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCACAUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.