miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8485 5' -45.6 NC_002169.1 + 119482 0.71 0.991851
Target:  5'- -gGACGAAAGCAAAgAUCGUcUAUg- -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCAcAUGau -5'
8485 5' -45.6 NC_002169.1 + 10868 0.72 0.989185
Target:  5'- -gGACG-AAGCAAAgAUCGaGUACUAg -3'
miRNA:   3'- agCUGCuUUCGUUUgUAGCaCAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 52932 0.72 0.989185
Target:  5'- cUCGAUGAAAGCAAAgAUUGaGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCaCAUGau -5'
8485 5' -45.6 NC_002169.1 + 49163 0.73 0.98397
Target:  5'- aCGACGAuGGCGccgauaccGAUAUUGUGUACa- -3'
miRNA:   3'- aGCUGCUuUCGU--------UUGUAGCACAUGau -5'
8485 5' -45.6 NC_002169.1 + 42222 0.73 0.98397
Target:  5'- -gGACGAAAGCAAAgAUUGUGUu--- -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACAugau -5'
8485 5' -45.6 NC_002169.1 + 104869 0.73 0.977038
Target:  5'- -gGACGAAAGCAAAgAUCGaGUagGCUGa -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCaCA--UGAU- -5'
8485 5' -45.6 NC_002169.1 + 41928 0.73 0.974299
Target:  5'- -gGACGAAAGCAAAgAUCGaGUAUg- -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCaCAUGau -5'
8485 5' -45.6 NC_002169.1 + 26639 0.74 0.964666
Target:  5'- cUCGGCGAGGGCAAAagg-GUGUACg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUguagCACAUGau -5'
8485 5' -45.6 NC_002169.1 + 105125 0.75 0.94824
Target:  5'- cUCuACGAAAGCAAAgAUCaUGUACUAg -3'
miRNA:   3'- -AGcUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 41904 0.75 0.94824
Target:  5'- -gGACGAAAGCAAA-AUCGaGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCaCAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 42291 0.75 0.94824
Target:  5'- -gGACGAAAGCAAAgAUUGUGUuugACUu -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACA---UGAu -5'
8485 5' -45.6 NC_002169.1 + 53076 0.75 0.943454
Target:  5'- -gGACGAAAGCAAAgAUCaUGUAUUGa -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 11204 0.76 0.927411
Target:  5'- -gGACGAAAGCAAAgAUCaUGUAUUAa -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 10679 0.76 0.927411
Target:  5'- gUCGAUGAAAGCAAAgAUCGUuGUGg-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCA-CAUgau -5'
8485 5' -45.6 NC_002169.1 + 97066 0.78 0.872295
Target:  5'- aUCGACGAuc-CGAACGUUGUGUACa- -3'
miRNA:   3'- -AGCUGCUuucGUUUGUAGCACAUGau -5'
8485 5' -45.6 NC_002169.1 + 104987 0.79 0.810714
Target:  5'- uUCGAUGAAAGCAAAgAUCaUGUGCg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGcACAUGau -5'
8485 5' -45.6 NC_002169.1 + 53156 0.8 0.760778
Target:  5'- -gGACGAAAGCAAAgAUCaUGUACUGa -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 105115 0.8 0.760778
Target:  5'- -gGACGAAAGCAAAgAUCaUGUACUGa -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 71670 0.81 0.7291
Target:  5'- -gGACGAAAGCAAAgAUCaUGUACUAg -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 52698 0.81 0.7291
Target:  5'- -gGACGAAAGCAAAgAUCaUGUACUAg -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGcACAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.