miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8485 5' -45.6 NC_002169.1 + 35844 0.68 0.999489
Target:  5'- cCGACGgcAGCGGGCGUCGUu----- -3'
miRNA:   3'- aGCUGCuuUCGUUUGUAGCAcaugau -5'
8485 5' -45.6 NC_002169.1 + 41801 0.67 0.999887
Target:  5'- cUCGAUGAAcGCAAACAUUGaaUAUUGc -3'
miRNA:   3'- -AGCUGCUUuCGUUUGUAGCacAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 41904 0.75 0.94824
Target:  5'- -gGACGAAAGCAAA-AUCGaGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCaCAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 41928 0.73 0.974299
Target:  5'- -gGACGAAAGCAAAgAUCGaGUAUg- -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCaCAUGau -5'
8485 5' -45.6 NC_002169.1 + 42031 0.88 0.399642
Target:  5'- cUCGAUGAAAGCAAAgAUCGUGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCACAUGau -5'
8485 5' -45.6 NC_002169.1 + 42032 0.93 0.218441
Target:  5'- -gGACGAAAGCAAAgAUCGUGUACUAu -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 42158 0.89 0.338115
Target:  5'- -aGAUGAAAGCAAAgAUCGUGUACUGa -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 42222 0.73 0.98397
Target:  5'- -gGACGAAAGCAAAgAUUGUGUu--- -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACAugau -5'
8485 5' -45.6 NC_002169.1 + 42291 0.75 0.94824
Target:  5'- -gGACGAAAGCAAAgAUUGUGUuugACUu -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACA---UGAu -5'
8485 5' -45.6 NC_002169.1 + 42350 0.83 0.607664
Target:  5'- cUCGAUGAAAGCAAAgAUCaUGUACUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 42419 0.84 0.563418
Target:  5'- gUCGAUGAAAGCAAAgAUCaUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 49163 0.73 0.98397
Target:  5'- aCGACGAuGGCGccgauaccGAUAUUGUGUACa- -3'
miRNA:   3'- aGCUGCUuUCGU--------UUGUAGCACAUGau -5'
8485 5' -45.6 NC_002169.1 + 52698 0.81 0.7291
Target:  5'- -gGACGAAAGCAAAgAUCaUGUACUAg -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 52815 0.88 0.381347
Target:  5'- cUCGAUGAAAGCAAAgAUgGUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAgCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 52825 1.05 0.04412
Target:  5'- uUCGAUGAAAGCAAACAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUGUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 52932 0.72 0.989185
Target:  5'- cUCGAUGAAAGCAAAgAUUGaGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCaCAUGau -5'
8485 5' -45.6 NC_002169.1 + 52942 0.86 0.457748
Target:  5'- -gGACGAAAGCAAAgAUCGUGUACc- -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACAUGau -5'
8485 5' -45.6 NC_002169.1 + 53060 0.7 0.997824
Target:  5'- -gGAUGAAAGCAAAgAUgaUGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUgUAgcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 53076 0.75 0.943454
Target:  5'- -gGACGAAAGCAAAgAUCaUGUAUUGa -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 53156 0.8 0.760778
Target:  5'- -gGACGAAAGCAAAgAUCaUGUACUGa -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGcACAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.