miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8485 5' -45.6 NC_002169.1 + 10551 0.94 0.196129
Target:  5'- -aGAUGAAAGCAAACAUUGUGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUGUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 10679 0.76 0.927411
Target:  5'- gUCGAUGAAAGCAAAgAUCGUuGUGg-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCA-CAUgau -5'
8485 5' -45.6 NC_002169.1 + 10741 0.88 0.381347
Target:  5'- uUCGACGAAAGCAAAgAUCaUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 10849 0.84 0.563418
Target:  5'- gUCGAUGAAAGCAAAgAUCaUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 10868 0.72 0.989185
Target:  5'- -gGACG-AAGCAAAgAUCGaGUACUAg -3'
miRNA:   3'- agCUGCuUUCGUUUgUAGCaCAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 10969 0.67 0.999752
Target:  5'- uUCGACGAAA-CAAAgAUCaUGUAUUAa -3'
miRNA:   3'- -AGCUGCUUUcGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 10978 1.09 0.02659
Target:  5'- cUCGACGAAAGCAAACAUCGUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUGUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 11068 0.88 0.381347
Target:  5'- uUCGACGAAAGCAAAgAUCaUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 11096 0.86 0.457748
Target:  5'- -gGACGAAAGCAAAgAUCGUGUACc- -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACAUGau -5'
8485 5' -45.6 NC_002169.1 + 11196 0.82 0.663376
Target:  5'- -gGACGAAAGCAAAgAUCGaGUACUAg -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCaCAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 11204 0.76 0.927411
Target:  5'- -gGACGAAAGCAAAgAUCaUGUAUUAa -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 11315 1 0.086639
Target:  5'- uUCGACGAAAGCAAAgAUCGUGUACUAu -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 11332 0.82 0.696527
Target:  5'- gUCGACGAAAGCAAAgAUCGUGcauuuCUGc -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCACau---GAU- -5'
8485 5' -45.6 NC_002169.1 + 11445 0.87 0.428113
Target:  5'- gUCGAUGAAAGCAAAgAUUGUGUAUUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 11474 0.93 0.224349
Target:  5'- gUCGAUGAAAGCAAACAUCaUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUGUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 11602 0.93 0.218441
Target:  5'- -gGACGAAAGCAAAgAUCGUGUACUAu -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 11604 0.88 0.390424
Target:  5'- -gGACGAAAGCAAAgAUCGUGUAUUAu -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 11732 0.85 0.498893
Target:  5'- gUCGAUGAAAGCAAAgAUCGaGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCaCAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 26639 0.74 0.964666
Target:  5'- cUCGGCGAGGGCAAAagg-GUGUACg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUguagCACAUGau -5'
8485 5' -45.6 NC_002169.1 + 32962 0.66 0.999953
Target:  5'- uUCGACGAAAcgacGCAAAUcgGUCaGcGUACUAg -3'
miRNA:   3'- -AGCUGCUUU----CGUUUG--UAG-CaCAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.