miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8485 5' -45.6 NC_002169.1 + 10978 1.09 0.02659
Target:  5'- cUCGACGAAAGCAAACAUCGUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUGUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 52825 1.05 0.04412
Target:  5'- uUCGAUGAAAGCAAACAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUGUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 105236 1.01 0.081756
Target:  5'- gUCGACGAAAGCAAAgAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 11315 1 0.086639
Target:  5'- uUCGACGAAAGCAAAgAUCGUGUACUAu -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 119762 1 0.089183
Target:  5'- uUCGACGAAAGCAAAgAUCGUGUACUGa -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 105255 0.97 0.136881
Target:  5'- uUCGAUGAAAGCAAAgAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 71797 0.96 0.153108
Target:  5'- cUCGAUGAAAGCAAAgAUCGUGUACUGa -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 120071 0.95 0.171061
Target:  5'- uUCGACGAAAGCAAAgAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 10551 0.94 0.196129
Target:  5'- -aGAUGAAAGCAAACAUUGUGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUGUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 105481 0.93 0.207026
Target:  5'- -gGACGAAAGCAAACAUUGUGUACUu -3'
miRNA:   3'- agCUGCUUUCGUUUGUAGCACAUGAu -5'
8485 5' -45.6 NC_002169.1 + 120199 0.93 0.207026
Target:  5'- -gGACGAAAGCAAAgAUCGUGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 119580 0.93 0.207026
Target:  5'- -gGACGAAAGCAAAgAUCGUGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 11602 0.93 0.218441
Target:  5'- -gGACGAAAGCAAAgAUCGUGUACUAu -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 42032 0.93 0.218441
Target:  5'- -gGACGAAAGCAAAgAUCGUGUACUAu -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 11474 0.93 0.224349
Target:  5'- gUCGAUGAAAGCAAACAUCaUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUGUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 105660 0.92 0.23657
Target:  5'- -gGACGAAAGCAAAgAUCGUGUACUGu -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 105532 0.91 0.276596
Target:  5'- uUCGAUGAAAGCAAAgAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 42158 0.89 0.338115
Target:  5'- -aGAUGAAAGCAAAgAUCGUGUACUGa -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 10741 0.88 0.381347
Target:  5'- uUCGACGAAAGCAAAgAUCaUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 11068 0.88 0.381347
Target:  5'- uUCGACGAAAGCAAAgAUCaUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.