Results 21 - 40 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8485 | 5' | -45.6 | NC_002169.1 | + | 52815 | 0.88 | 0.381347 |
Target: 5'- cUCGAUGAAAGCAAAgAUgGUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUgUAgCACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 11604 | 0.88 | 0.390424 |
Target: 5'- -gGACGAAAGCAAAgAUCGUGUAUUAu -3' miRNA: 3'- agCUGCUUUCGUUUgUAGCACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 42031 | 0.88 | 0.399642 |
Target: 5'- cUCGAUGAAAGCAAAgAUCGUGUAUg- -3' miRNA: 3'- -AGCUGCUUUCGUUUgUAGCACAUGau -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 53284 | 0.87 | 0.408998 |
Target: 5'- gUCGACGAAAGCAAAgAUCaUGUACUGa -3' miRNA: 3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 105441 | 0.87 | 0.418489 |
Target: 5'- uUCGACGAAAGCAAAgAUUGUGUAUg- -3' miRNA: 3'- -AGCUGCUUUCGUUUgUAGCACAUGau -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 11445 | 0.87 | 0.428113 |
Target: 5'- gUCGAUGAAAGCAAAgAUUGUGUAUUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUgUAGCACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 52942 | 0.86 | 0.457748 |
Target: 5'- -gGACGAAAGCAAAgAUCGUGUACc- -3' miRNA: 3'- agCUGCUUUCGUUUgUAGCACAUGau -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 11096 | 0.86 | 0.457748 |
Target: 5'- -gGACGAAAGCAAAgAUCGUGUACc- -3' miRNA: 3'- agCUGCUUUCGUUUgUAGCACAUGau -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 119635 | 0.86 | 0.457748 |
Target: 5'- -gGACGAAAGCAAAgAUCGUGUACc- -3' miRNA: 3'- agCUGCUUUCGUUUgUAGCACAUGau -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 11732 | 0.85 | 0.498893 |
Target: 5'- gUCGAUGAAAGCAAAgAUCGaGUACUAg -3' miRNA: 3'- -AGCUGCUUUCGUUUgUAGCaCAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 119354 | 0.85 | 0.541603 |
Target: 5'- uUCGAUaAAAGCAAAgAUCGUGUACUAa -3' miRNA: 3'- -AGCUGcUUUCGUUUgUAGCACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 105569 | 0.84 | 0.552478 |
Target: 5'- -gGAUGAAAGCAAAgAUCGUGUAUUAa -3' miRNA: 3'- agCUGCUUUCGUUUgUAGCACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 53204 | 0.84 | 0.563418 |
Target: 5'- gUCGAUGAAAGCAAAgAUCaUGUACUAg -3' miRNA: 3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 104997 | 0.84 | 0.563418 |
Target: 5'- uUCGAUGAAAGCAAAgAUCaUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 119452 | 0.84 | 0.563418 |
Target: 5'- uUCGAUGAAAGCAAAgAUCaUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 42419 | 0.84 | 0.563418 |
Target: 5'- gUCGAUGAAAGCAAAgAUCaUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 10849 | 0.84 | 0.563418 |
Target: 5'- gUCGAUGAAAGCAAAgAUCaUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 42350 | 0.83 | 0.607664 |
Target: 5'- cUCGAUGAAAGCAAAgAUCaUGUACUAc -3' miRNA: 3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 105376 | 0.83 | 0.629954 |
Target: 5'- gUCGACGAucuuggacaaAAGCAAAgAUCGUGUAUUAa -3' miRNA: 3'- -AGCUGCU----------UUCGUUUgUAGCACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 104927 | 0.82 | 0.65225 |
Target: 5'- gUCGACGAAAGCAAAgAUCaUGUAUUGa -3' miRNA: 3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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