Results 21 - 40 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8485 | 5' | -45.6 | NC_002169.1 | + | 97066 | 0.78 | 0.872295 |
Target: 5'- aUCGACGAuc-CGAACGUUGUGUACa- -3' miRNA: 3'- -AGCUGCUuucGUUUGUAGCACAUGau -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 104987 | 0.79 | 0.810714 |
Target: 5'- uUCGAUGAAAGCAAAgAUCaUGUGCg- -3' miRNA: 3'- -AGCUGCUUUCGUUUgUAGcACAUGau -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 11068 | 0.88 | 0.381347 |
Target: 5'- uUCGACGAAAGCAAAgAUCaUGUACUAg -3' miRNA: 3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 10741 | 0.88 | 0.381347 |
Target: 5'- uUCGACGAAAGCAAAgAUCaUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 105532 | 0.91 | 0.276596 |
Target: 5'- uUCGAUGAAAGCAAAgAUCGUGUAUUAc -3' miRNA: 3'- -AGCUGCUUUCGUUUgUAGCACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 11474 | 0.93 | 0.224349 |
Target: 5'- gUCGAUGAAAGCAAACAUCaUGUACUAg -3' miRNA: 3'- -AGCUGCUUUCGUUUGUAGcACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 42032 | 0.93 | 0.218441 |
Target: 5'- -gGACGAAAGCAAAgAUCGUGUACUAu -3' miRNA: 3'- agCUGCUUUCGUUUgUAGCACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 10551 | 0.94 | 0.196129 |
Target: 5'- -aGAUGAAAGCAAACAUUGUGUACUAa -3' miRNA: 3'- agCUGCUUUCGUUUGUAGCACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 120071 | 0.95 | 0.171061 |
Target: 5'- uUCGACGAAAGCAAAgAUCGUGUAUUAc -3' miRNA: 3'- -AGCUGCUUUCGUUUgUAGCACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 11315 | 1 | 0.086639 |
Target: 5'- uUCGACGAAAGCAAAgAUCGUGUACUAu -3' miRNA: 3'- -AGCUGCUUUCGUUUgUAGCACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 52815 | 0.88 | 0.381347 |
Target: 5'- cUCGAUGAAAGCAAAgAUgGUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUgUAgCACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 11604 | 0.88 | 0.390424 |
Target: 5'- -gGACGAAAGCAAAgAUCGUGUAUUAu -3' miRNA: 3'- agCUGCUUUCGUUUgUAGCACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 53156 | 0.8 | 0.760778 |
Target: 5'- -gGACGAAAGCAAAgAUCaUGUACUGa -3' miRNA: 3'- agCUGCUUUCGUUUgUAGcACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 71670 | 0.81 | 0.7291 |
Target: 5'- -gGACGAAAGCAAAgAUCaUGUACUAg -3' miRNA: 3'- agCUGCUUUCGUUUgUAGcACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 52698 | 0.81 | 0.7291 |
Target: 5'- -gGACGAAAGCAAAgAUCaUGUACUAg -3' miRNA: 3'- agCUGCUUUCGUUUgUAGcACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 119452 | 0.84 | 0.563418 |
Target: 5'- uUCGAUGAAAGCAAAgAUCaUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 10849 | 0.84 | 0.563418 |
Target: 5'- gUCGAUGAAAGCAAAgAUCaUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 119354 | 0.85 | 0.541603 |
Target: 5'- uUCGAUaAAAGCAAAgAUCGUGUACUAa -3' miRNA: 3'- -AGCUGcUUUCGUUUgUAGCACAUGAU- -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 119635 | 0.86 | 0.457748 |
Target: 5'- -gGACGAAAGCAAAgAUCGUGUACc- -3' miRNA: 3'- agCUGCUUUCGUUUgUAGCACAUGau -5' |
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8485 | 5' | -45.6 | NC_002169.1 | + | 105441 | 0.87 | 0.418489 |
Target: 5'- uUCGACGAAAGCAAAgAUUGUGUAUg- -3' miRNA: 3'- -AGCUGCUUUCGUUUgUAGCACAUGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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