miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8485 5' -45.6 NC_002169.1 + 97066 0.78 0.872295
Target:  5'- aUCGACGAuc-CGAACGUUGUGUACa- -3'
miRNA:   3'- -AGCUGCUuucGUUUGUAGCACAUGau -5'
8485 5' -45.6 NC_002169.1 + 119635 0.86 0.457748
Target:  5'- -gGACGAAAGCAAAgAUCGUGUACc- -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACAUGau -5'
8485 5' -45.6 NC_002169.1 + 119354 0.85 0.541603
Target:  5'- uUCGAUaAAAGCAAAgAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGcUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 10849 0.84 0.563418
Target:  5'- gUCGAUGAAAGCAAAgAUCaUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 119452 0.84 0.563418
Target:  5'- uUCGAUGAAAGCAAAgAUCaUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 52698 0.81 0.7291
Target:  5'- -gGACGAAAGCAAAgAUCaUGUACUAg -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 71670 0.81 0.7291
Target:  5'- -gGACGAAAGCAAAgAUCaUGUACUAg -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 53156 0.8 0.760778
Target:  5'- -gGACGAAAGCAAAgAUCaUGUACUGa -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 104987 0.79 0.810714
Target:  5'- uUCGAUGAAAGCAAAgAUCaUGUGCg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGcACAUGau -5'
8485 5' -45.6 NC_002169.1 + 105441 0.87 0.418489
Target:  5'- uUCGACGAAAGCAAAgAUUGUGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCACAUGau -5'
8485 5' -45.6 NC_002169.1 + 11604 0.88 0.390424
Target:  5'- -gGACGAAAGCAAAgAUCGUGUAUUAu -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 52815 0.88 0.381347
Target:  5'- cUCGAUGAAAGCAAAgAUgGUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAgCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 11315 1 0.086639
Target:  5'- uUCGACGAAAGCAAAgAUCGUGUACUAu -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 120071 0.95 0.171061
Target:  5'- uUCGACGAAAGCAAAgAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 10551 0.94 0.196129
Target:  5'- -aGAUGAAAGCAAACAUUGUGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUGUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 42032 0.93 0.218441
Target:  5'- -gGACGAAAGCAAAgAUCGUGUACUAu -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 11474 0.93 0.224349
Target:  5'- gUCGAUGAAAGCAAACAUCaUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUGUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 105532 0.91 0.276596
Target:  5'- uUCGAUGAAAGCAAAgAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 10741 0.88 0.381347
Target:  5'- uUCGACGAAAGCAAAgAUCaUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 11068 0.88 0.381347
Target:  5'- uUCGACGAAAGCAAAgAUCaUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.