miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8485 5' -45.6 NC_002169.1 + 58235 0.66 0.999964
Target:  5'- aUCGGCGugGGCgAAACGUgCGUGUucagcguACUGc -3'
miRNA:   3'- -AGCUGCuuUCG-UUUGUA-GCACA-------UGAU- -5'
8485 5' -45.6 NC_002169.1 + 104927 0.82 0.65225
Target:  5'- gUCGACGAAAGCAAAgAUCaUGUAUUGa -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 42350 0.83 0.607664
Target:  5'- cUCGAUGAAAGCAAAgAUCaUGUACUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 10978 1.09 0.02659
Target:  5'- cUCGACGAAAGCAAACAUCGUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUGUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 117845 0.67 0.999852
Target:  5'- aCGACGGGAGCGGcgcGCAUCuucuUGUugGCUGc -3'
miRNA:   3'- aGCUGCUUUCGUU---UGUAGc---ACA--UGAU- -5'
8485 5' -45.6 NC_002169.1 + 70186 0.69 0.999202
Target:  5'- gUCGACGAGGGCAAcaaGUCG-GUGg-- -3'
miRNA:   3'- -AGCUGCUUUCGUUug-UAGCaCAUgau -5'
8485 5' -45.6 NC_002169.1 + 80408 0.69 0.998992
Target:  5'- uUCGGCGAcgauggguuucguGAGC-GGCAUCGUGaGCa- -3'
miRNA:   3'- -AGCUGCU-------------UUCGuUUGUAGCACaUGau -5'
8485 5' -45.6 NC_002169.1 + 53060 0.7 0.997824
Target:  5'- -gGAUGAAAGCAAAgAUgaUGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUgUAgcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 41928 0.73 0.974299
Target:  5'- -gGACGAAAGCAAAgAUCGaGUAUg- -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCaCAUGau -5'
8485 5' -45.6 NC_002169.1 + 11196 0.82 0.663376
Target:  5'- -gGACGAAAGCAAAgAUCGaGUACUAg -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCaCAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 10679 0.76 0.927411
Target:  5'- gUCGAUGAAAGCAAAgAUCGUuGUGg-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCA-CAUgau -5'
8485 5' -45.6 NC_002169.1 + 10868 0.72 0.989185
Target:  5'- -gGACG-AAGCAAAgAUCGaGUACUAg -3'
miRNA:   3'- agCUGCuUUCGUUUgUAGCaCAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 32962 0.66 0.999953
Target:  5'- uUCGACGAAAcgacGCAAAUcgGUCaGcGUACUAg -3'
miRNA:   3'- -AGCUGCUUU----CGUUUG--UAG-CaCAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 105115 0.8 0.760778
Target:  5'- -gGACGAAAGCAAAgAUCaUGUACUGa -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 118888 0.66 0.999953
Target:  5'- aUCGAUGAGAGCcuguAgAUCGgccgugaauuguUGUGCUGa -3'
miRNA:   3'- -AGCUGCUUUCGuu--UgUAGC------------ACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 119482 0.71 0.991851
Target:  5'- -gGACGAAAGCAAAgAUCGUcUAUg- -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCAcAUGau -5'
8485 5' -45.6 NC_002169.1 + 11332 0.82 0.696527
Target:  5'- gUCGACGAAAGCAAAgAUCGUGcauuuCUGc -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCACau---GAU- -5'
8485 5' -45.6 NC_002169.1 + 105376 0.83 0.629954
Target:  5'- gUCGACGAucuuggacaaAAGCAAAgAUCGUGUAUUAa -3'
miRNA:   3'- -AGCUGCU----------UUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 112414 0.67 0.999887
Target:  5'- cUCGACGAAGuCAAACAUCacg-GCUAc -3'
miRNA:   3'- -AGCUGCUUUcGUUUGUAGcacaUGAU- -5'
8485 5' -45.6 NC_002169.1 + 120058 0.69 0.999202
Target:  5'- aCGACG-AAGUggGCAUaCGUGUGg-- -3'
miRNA:   3'- aGCUGCuUUCGuuUGUA-GCACAUgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.