miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8485 5' -45.6 NC_002169.1 + 134703 0.66 0.999964
Target:  5'- cUCGACGAguauucgucccgcGAGCAAACAUaaucauaaUGUACg- -3'
miRNA:   3'- -AGCUGCU-------------UUCGUUUGUAgc------ACAUGau -5'
8485 5' -45.6 NC_002169.1 + 125510 0.68 0.999465
Target:  5'- gUCGACGA--GCAGACAcuggccgcucugCGUGUACc- -3'
miRNA:   3'- -AGCUGCUuuCGUUUGUa-----------GCACAUGau -5'
8485 5' -45.6 NC_002169.1 + 123108 0.68 0.999682
Target:  5'- gUCGACGAAuucgauauAGCGAACAagaucuacgUCG-GUGCg- -3'
miRNA:   3'- -AGCUGCUU--------UCGUUUGU---------AGCaCAUGau -5'
8485 5' -45.6 NC_002169.1 + 120199 0.93 0.207026
Target:  5'- -gGACGAAAGCAAAgAUCGUGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 120071 0.95 0.171061
Target:  5'- uUCGACGAAAGCAAAgAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 120058 0.69 0.999202
Target:  5'- aCGACG-AAGUggGCAUaCGUGUGg-- -3'
miRNA:   3'- aGCUGCuUUCGuuUGUA-GCACAUgau -5'
8485 5' -45.6 NC_002169.1 + 119762 1 0.089183
Target:  5'- uUCGACGAAAGCAAAgAUCGUGUACUGa -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 119635 0.86 0.457748
Target:  5'- -gGACGAAAGCAAAgAUCGUGUACc- -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACAUGau -5'
8485 5' -45.6 NC_002169.1 + 119580 0.93 0.207026
Target:  5'- -gGACGAAAGCAAAgAUCGUGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 119482 0.71 0.991851
Target:  5'- -gGACGAAAGCAAAgAUCGUcUAUg- -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCAcAUGau -5'
8485 5' -45.6 NC_002169.1 + 119452 0.84 0.563418
Target:  5'- uUCGAUGAAAGCAAAgAUCaUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGcACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 119354 0.85 0.541603
Target:  5'- uUCGAUaAAAGCAAAgAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGcUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 118888 0.66 0.999953
Target:  5'- aUCGAUGAGAGCcuguAgAUCGgccgugaauuguUGUGCUGa -3'
miRNA:   3'- -AGCUGCUUUCGuu--UgUAGC------------ACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 117845 0.67 0.999852
Target:  5'- aCGACGGGAGCGGcgcGCAUCuucuUGUugGCUGc -3'
miRNA:   3'- aGCUGCUUUCGUU---UGUAGc---ACA--UGAU- -5'
8485 5' -45.6 NC_002169.1 + 112414 0.67 0.999887
Target:  5'- cUCGACGAAGuCAAACAUCacg-GCUAc -3'
miRNA:   3'- -AGCUGCUUUcGUUUGUAGcacaUGAU- -5'
8485 5' -45.6 NC_002169.1 + 111675 0.66 0.999982
Target:  5'- gUCGACGcuGGCGAugGcCGUGaACg- -3'
miRNA:   3'- -AGCUGCuuUCGUUugUaGCACaUGau -5'
8485 5' -45.6 NC_002169.1 + 105660 0.92 0.23657
Target:  5'- -gGACGAAAGCAAAgAUCGUGUACUGu -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 105569 0.84 0.552478
Target:  5'- -gGAUGAAAGCAAAgAUCGUGUAUUAa -3'
miRNA:   3'- agCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 105532 0.91 0.276596
Target:  5'- uUCGAUGAAAGCAAAgAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUgUAGCACAUGAU- -5'
8485 5' -45.6 NC_002169.1 + 105481 0.93 0.207026
Target:  5'- -gGACGAAAGCAAACAUUGUGUACUu -3'
miRNA:   3'- agCUGCUUUCGUUUGUAGCACAUGAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.