miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8486 5' -47.6 NC_002169.1 + 133720 0.66 0.999463
Target:  5'- cUGGACGAucucgcGCAGAGGUUGcugcauuugaugGUGCCc -3'
miRNA:   3'- -ACCUGCUuu----CGUUUCUAGCa-----------CAUGGu -5'
8486 5' -47.6 NC_002169.1 + 84422 0.67 0.998796
Target:  5'- aGGAUGcGAGUucAGGAUCGaaUGUACUAc -3'
miRNA:   3'- aCCUGCuUUCGu-UUCUAGC--ACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 37286 0.67 0.998224
Target:  5'- cGGAuCGAcgGAGCAGGGAUCGaUG-ACgCAa -3'
miRNA:   3'- aCCU-GCU--UUCGUUUCUAGC-ACaUG-GU- -5'
8486 5' -47.6 NC_002169.1 + 11476 0.67 0.99786
Target:  5'- -cGAUGAAAGCAAAcAUCaUGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 129820 0.7 0.986408
Target:  5'- cUGaACGAAcGCGacGAGAUCGUGUgcACCAu -3'
miRNA:   3'- -ACcUGCUUuCGU--UUCUAGCACA--UGGU- -5'
8486 5' -47.6 NC_002169.1 + 52934 0.7 0.986408
Target:  5'- -cGAUGAAAGCAAAGAUUGaGUAUgAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCaCAUGgU- -5'
8486 5' -47.6 NC_002169.1 + 10677 0.73 0.935963
Target:  5'- -cGAUGAAAGCAAAGAUCGUuGUGg-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCA-CAUggu -5'
8486 5' -47.6 NC_002169.1 + 105353 0.73 0.930579
Target:  5'- uUGGAUGAAAGCAAAcAUgaUGUACCGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAgcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 10551 0.75 0.88526
Target:  5'- -aGAUGAAAGCAAAcAUUGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 104989 0.76 0.836417
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUGCgAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGgU- -5'
8486 5' -47.6 NC_002169.1 + 104925 0.77 0.779945
Target:  5'- -cGACGAAAGCAAAGAUCaUGUAUUg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGGu -5'
8486 5' -47.6 NC_002169.1 + 105128 0.77 0.769938
Target:  5'- --uACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- accUGCUUUCGUUUCUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 104797 0.78 0.759791
Target:  5'- uUGGACGAAAGCAAAGAUUG---ACUAu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCacaUGGU- -5'
8486 5' -47.6 NC_002169.1 + 11330 0.78 0.728614
Target:  5'- -cGACGAAAGCAAAGAUCGUGcAUUu -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACaUGGu -5'
8486 5' -47.6 NC_002169.1 + 52823 0.79 0.674887
Target:  5'- -cGAUGAAAGCAAAcAUCGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 41902 0.79 0.674887
Target:  5'- uUGGACGAAAGCAAA-AUCGaGUACUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAGCaCAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 42348 0.8 0.653038
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUACUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 42417 0.8 0.620147
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 119454 0.8 0.620147
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 10851 0.8 0.620147
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.