miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8486 5' -47.6 NC_002169.1 + 119633 1.1 0.013529
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACCAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 11098 1.1 0.013529
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACCAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 52944 1.09 0.016642
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACCGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 119582 1.06 0.026679
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 120201 1.06 0.026679
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 42030 1.05 0.028295
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 11604 1.05 0.028295
Target:  5'- gUGGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 105662 1.04 0.034746
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACUg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGGu -5'
8486 5' -47.6 NC_002169.1 + 11602 1 0.057017
Target:  5'- gUGGACGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 105571 0.97 0.090259
Target:  5'- uUGGAUGAAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 105238 0.96 0.098276
Target:  5'- -cGACGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 11317 0.96 0.103989
Target:  5'- -cGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 11198 0.95 0.116365
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCaCAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 119760 0.94 0.126534
Target:  5'- -cGACGAAAGCAAAGAUCGUGUACUg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGGu -5'
8486 5' -47.6 NC_002169.1 + 52696 0.94 0.137521
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 71668 0.94 0.137521
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 105253 0.92 0.162158
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 53154 0.92 0.175914
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUACUg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUGGu -5'
8486 5' -47.6 NC_002169.1 + 105117 0.92 0.175914
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUACUg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUGGu -5'
8486 5' -47.6 NC_002169.1 + 120073 0.9 0.206563
Target:  5'- -cGACGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.