miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8486 5' -47.6 NC_002169.1 + 71795 0.9 0.206563
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUACUg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGGu -5'
8486 5' -47.6 NC_002169.1 + 42158 0.9 0.2121
Target:  5'- -aGAUGAAAGCAAAGAUCGUGUACUg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGGu -5'
8486 5' -47.6 NC_002169.1 + 11202 0.89 0.261104
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUAUUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 42289 0.89 0.261104
Target:  5'- uUGGACGAAAGCAAAGAUUGUGUuugACUu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACA---UGGu -5'
8486 5' -47.6 NC_002169.1 + 105366 0.88 0.274715
Target:  5'- uUGGACaAAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- -ACCUGcUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 41930 0.88 0.296188
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUAUgGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCaCAUGgU- -5'
8486 5' -47.6 NC_002169.1 + 53074 0.87 0.326814
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUAUUg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUGGu -5'
8486 5' -47.6 NC_002169.1 + 105534 0.87 0.326814
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 42220 0.86 0.342986
Target:  5'- uUGGACGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAuggu -5'
8486 5' -47.6 NC_002169.1 + 119484 0.86 0.368308
Target:  5'- uUGGACGAAAGCAAAGAUCGUcUAUgAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCAcAUGgU- -5'
8486 5' -47.6 NC_002169.1 + 42029 0.85 0.394883
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAUgAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGgU- -5'
8486 5' -47.6 NC_002169.1 + 104867 0.85 0.394883
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUagGCUg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCaCA--UGGu -5'
8486 5' -47.6 NC_002169.1 + 10870 0.85 0.394883
Target:  5'- uUGGACG-AAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- -ACCUGCuUUCGUUUCUAGCaCAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 105483 0.85 0.394883
Target:  5'- uUGGACGAAAGCAAAcAUUGUGUACUu -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAGCACAUGGu -5'
8486 5' -47.6 NC_002169.1 + 52817 0.84 0.422667
Target:  5'- -cGAUGAAAGCAAAGAUgGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAgCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 105443 0.84 0.422667
Target:  5'- -cGACGAAAGCAAAGAUUGUGUAUgAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGgU- -5'
8486 5' -47.6 NC_002169.1 + 10743 0.84 0.432186
Target:  5'- -cGACGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 11070 0.84 0.432186
Target:  5'- -cGACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 10976 0.83 0.481568
Target:  5'- -cGACGAAAGCAAAcAUCGUGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 53062 0.83 0.491774
Target:  5'- uUGGAUGAAAGCAAAGAUgaUGUACUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAgcACAUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.