miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8486 5' -47.6 NC_002169.1 + 42029 0.85 0.394883
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAUgAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGgU- -5'
8486 5' -47.6 NC_002169.1 + 42030 1.05 0.028295
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 42158 0.9 0.2121
Target:  5'- -aGAUGAAAGCAAAGAUCGUGUACUg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGGu -5'
8486 5' -47.6 NC_002169.1 + 42220 0.86 0.342986
Target:  5'- uUGGACGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAuggu -5'
8486 5' -47.6 NC_002169.1 + 42289 0.89 0.261104
Target:  5'- uUGGACGAAAGCAAAGAUUGUGUuugACUu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACA---UGGu -5'
8486 5' -47.6 NC_002169.1 + 42348 0.8 0.653038
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUACUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 42417 0.8 0.620147
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 52696 0.94 0.137521
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 52817 0.84 0.422667
Target:  5'- -cGAUGAAAGCAAAGAUgGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAgCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 52823 0.79 0.674887
Target:  5'- -cGAUGAAAGCAAAcAUCGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 52934 0.7 0.986408
Target:  5'- -cGAUGAAAGCAAAGAUUGaGUAUgAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCaCAUGgU- -5'
8486 5' -47.6 NC_002169.1 + 52944 1.09 0.016642
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACCGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 53062 0.83 0.491774
Target:  5'- uUGGAUGAAAGCAAAGAUgaUGUACUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAgcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 53074 0.87 0.326814
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUAUUg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUGGu -5'
8486 5' -47.6 NC_002169.1 + 53154 0.92 0.175914
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUACUg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUGGu -5'
8486 5' -47.6 NC_002169.1 + 53202 0.8 0.620147
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 53282 0.82 0.522961
Target:  5'- -cGACGAAAGCAAAGAUCaUGUACUg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGGu -5'
8486 5' -47.6 NC_002169.1 + 71668 0.94 0.137521
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 71795 0.9 0.206563
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUACUg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGGu -5'
8486 5' -47.6 NC_002169.1 + 84422 0.67 0.998796
Target:  5'- aGGAUGcGAGUucAGGAUCGaaUGUACUAc -3'
miRNA:   3'- aCCUGCuUUCGu-UUCUAGC--ACAUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.