miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8486 5' -47.6 NC_002169.1 + 105238 0.96 0.098276
Target:  5'- -cGACGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 11317 0.96 0.103989
Target:  5'- -cGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 52696 0.94 0.137521
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 71668 0.94 0.137521
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 53154 0.92 0.175914
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUACUg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUGGu -5'
8486 5' -47.6 NC_002169.1 + 42220 0.86 0.342986
Target:  5'- uUGGACGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAuggu -5'
8486 5' -47.6 NC_002169.1 + 105534 0.87 0.326814
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 53074 0.87 0.326814
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUAUUg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUGGu -5'
8486 5' -47.6 NC_002169.1 + 42289 0.89 0.261104
Target:  5'- uUGGACGAAAGCAAAGAUUGUGUuugACUu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACA---UGGu -5'
8486 5' -47.6 NC_002169.1 + 11202 0.89 0.261104
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUAUUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 120073 0.9 0.206563
Target:  5'- -cGACGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 42417 0.8 0.620147
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 42348 0.8 0.653038
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUACUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 52823 0.79 0.674887
Target:  5'- -cGAUGAAAGCAAAcAUCGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 11330 0.78 0.728614
Target:  5'- -cGACGAAAGCAAAGAUCGUGcAUUu -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACaUGGu -5'
8486 5' -47.6 NC_002169.1 + 104925 0.77 0.779945
Target:  5'- -cGACGAAAGCAAAGAUCaUGUAUUg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGGu -5'
8486 5' -47.6 NC_002169.1 + 10677 0.73 0.935963
Target:  5'- -cGAUGAAAGCAAAGAUCGUuGUGg-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCA-CAUggu -5'
8486 5' -47.6 NC_002169.1 + 129820 0.7 0.986408
Target:  5'- cUGaACGAAcGCGacGAGAUCGUGUgcACCAu -3'
miRNA:   3'- -ACcUGCUUuCGU--UUCUAGCACA--UGGU- -5'
8486 5' -47.6 NC_002169.1 + 37286 0.67 0.998224
Target:  5'- cGGAuCGAcgGAGCAGGGAUCGaUG-ACgCAa -3'
miRNA:   3'- aCCU-GCU--UUCGUUUCUAGC-ACaUG-GU- -5'
8486 5' -47.6 NC_002169.1 + 11098 1.1 0.013529
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACCAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.