miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8486 5' -47.6 NC_002169.1 + 133720 0.66 0.999463
Target:  5'- cUGGACGAucucgcGCAGAGGUUGcugcauuugaugGUGCCc -3'
miRNA:   3'- -ACCUGCUuu----CGUUUCUAGCa-----------CAUGGu -5'
8486 5' -47.6 NC_002169.1 + 129820 0.7 0.986408
Target:  5'- cUGaACGAAcGCGacGAGAUCGUGUgcACCAu -3'
miRNA:   3'- -ACcUGCUUuCGU--UUCUAGCACA--UGGU- -5'
8486 5' -47.6 NC_002169.1 + 120201 1.06 0.026679
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 120073 0.9 0.206563
Target:  5'- -cGACGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 119760 0.94 0.126534
Target:  5'- -cGACGAAAGCAAAGAUCGUGUACUg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGGu -5'
8486 5' -47.6 NC_002169.1 + 119633 1.1 0.013529
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACCAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 119582 1.06 0.026679
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 119484 0.86 0.368308
Target:  5'- uUGGACGAAAGCAAAGAUCGUcUAUgAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCAcAUGgU- -5'
8486 5' -47.6 NC_002169.1 + 119454 0.8 0.620147
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 119356 0.81 0.598254
Target:  5'- -cGAUaAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- acCUGcUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 105662 1.04 0.034746
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACUg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGGu -5'
8486 5' -47.6 NC_002169.1 + 105571 0.97 0.090259
Target:  5'- uUGGAUGAAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 105534 0.87 0.326814
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 105483 0.85 0.394883
Target:  5'- uUGGACGAAAGCAAAcAUUGUGUACUu -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAGCACAUGGu -5'
8486 5' -47.6 NC_002169.1 + 105443 0.84 0.422667
Target:  5'- -cGACGAAAGCAAAGAUUGUGUAUgAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGgU- -5'
8486 5' -47.6 NC_002169.1 + 105366 0.88 0.274715
Target:  5'- uUGGACaAAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- -ACCUGcUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 105353 0.73 0.930579
Target:  5'- uUGGAUGAAAGCAAAcAUgaUGUACCGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAgcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 105253 0.92 0.162158
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 105238 0.96 0.098276
Target:  5'- -cGACGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 105128 0.77 0.769938
Target:  5'- --uACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- accUGCUUUCGUUUCUAGcACAUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.