miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8486 5' -47.6 NC_002169.1 + 84422 0.67 0.998796
Target:  5'- aGGAUGcGAGUucAGGAUCGaaUGUACUAc -3'
miRNA:   3'- aCCUGCuUUCGu-UUCUAGC--ACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 10870 0.85 0.394883
Target:  5'- uUGGACG-AAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- -ACCUGCuUUCGUUUCUAGCaCAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 119484 0.86 0.368308
Target:  5'- uUGGACGAAAGCAAAGAUCGUcUAUgAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCAcAUGgU- -5'
8486 5' -47.6 NC_002169.1 + 11098 1.1 0.013529
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACCAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 104925 0.77 0.779945
Target:  5'- -cGACGAAAGCAAAGAUCaUGUAUUg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGGu -5'
8486 5' -47.6 NC_002169.1 + 11330 0.78 0.728614
Target:  5'- -cGACGAAAGCAAAGAUCGUGcAUUu -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACaUGGu -5'
8486 5' -47.6 NC_002169.1 + 42348 0.8 0.653038
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUACUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 42417 0.8 0.620147
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 11730 0.82 0.554881
Target:  5'- -cGAUGAAAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCaCAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 42029 0.85 0.394883
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAUgAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGgU- -5'
8486 5' -47.6 NC_002169.1 + 11443 0.83 0.491774
Target:  5'- -cGAUGAAAGCAAAGAUUGUGUAUUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 104995 0.8 0.620147
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 37286 0.67 0.998224
Target:  5'- cGGAuCGAcgGAGCAGGGAUCGaUG-ACgCAa -3'
miRNA:   3'- aCCU-GCU--UUCGUUUCUAGC-ACaUG-GU- -5'
8486 5' -47.6 NC_002169.1 + 53062 0.83 0.491774
Target:  5'- uUGGAUGAAAGCAAAGAUgaUGUACUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAgcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 129820 0.7 0.986408
Target:  5'- cUGaACGAAcGCGacGAGAUCGUGUgcACCAu -3'
miRNA:   3'- -ACcUGCUUuCGU--UUCUAGCACA--UGGU- -5'
8486 5' -47.6 NC_002169.1 + 53202 0.8 0.620147
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 10976 0.83 0.481568
Target:  5'- -cGACGAAAGCAAAcAUCGUGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGCACAUGGU- -5'
8486 5' -47.6 NC_002169.1 + 105483 0.85 0.394883
Target:  5'- uUGGACGAAAGCAAAcAUUGUGUACUu -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAGCACAUGGu -5'
8486 5' -47.6 NC_002169.1 + 10677 0.73 0.935963
Target:  5'- -cGAUGAAAGCAAAGAUCGUuGUGg-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCA-CAUggu -5'
8486 5' -47.6 NC_002169.1 + 52823 0.79 0.674887
Target:  5'- -cGAUGAAAGCAAAcAUCGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGCACAUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.