Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8487 | 5' | -46.8 | NC_002169.1 | + | 119454 | 0.76 | 0.861531 |
Target: 5'- -cGAUGAAAGCAAAGAUCauGUACUAa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 10851 | 0.76 | 0.861531 |
Target: 5'- -cGAUGAAAGCAAAGAUCauGUACUAa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 42417 | 0.76 | 0.861531 |
Target: 5'- -cGAUGAAAGCAAAGAUCauGUACUAa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 104995 | 0.76 | 0.861531 |
Target: 5'- -cGAUGAAAGCAAAGAUCauGUACUAa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 53202 | 0.76 | 0.861531 |
Target: 5'- -cGAUGAAAGCAAAGAUCauGUACUAg -3' miRNA: 3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 11443 | 0.77 | 0.798121 |
Target: 5'- -cGAUGAAAGCAAAGAUUGuGUAUUAa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 10976 | 0.77 | 0.798121 |
Target: 5'- -cGACGAAAGCAAAcAUCGuGUACUAg -3' miRNA: 3'- acCUGCUUUCGUUUcUAGCuCAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 105443 | 0.78 | 0.78827 |
Target: 5'- -cGACGAAAGCAAAGAUUGuGUAUg- -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCuCAUGau -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 42029 | 0.78 | 0.75777 |
Target: 5'- -cGAUGAAAGCAAAGAUCGuGUAUg- -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCuCAUGau -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 105483 | 0.79 | 0.736761 |
Target: 5'- uUGGACGAAAGCAAAcAUUGuGUACUu -3' miRNA: 3'- -ACCUGCUUUCGUUUcUAGCuCAUGAu -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 52817 | 0.79 | 0.736761 |
Target: 5'- -cGAUGAAAGCAAAGAUgGuGUACUAa -3' miRNA: 3'- acCUGCUUUCGUUUCUAgCuCAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 53282 | 0.79 | 0.715323 |
Target: 5'- -cGACGAAAGCAAAGAUCauGUACUGa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 11070 | 0.8 | 0.682567 |
Target: 5'- -cGACGAAAGCAAAGAUCauGUACUAg -3' miRNA: 3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 10743 | 0.8 | 0.682567 |
Target: 5'- -cGACGAAAGCAAAGAUCauGUACUAa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 42220 | 0.8 | 0.671534 |
Target: 5'- uUGGACGAAAGCAAAGAUUGuGUu--- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCuCAugau -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 105534 | 0.81 | 0.60492 |
Target: 5'- -cGAUGAAAGCAAAGAUCGuGUAUUAc -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 52934 | 0.82 | 0.5718 |
Target: 5'- -cGAUGAAAGCAAAGAUUGAGUAUg- -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCUCAUGau -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 42289 | 0.82 | 0.549956 |
Target: 5'- uUGGACGAAAGCAAAGAUUGuGUuugACUu -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCuCA---UGAu -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 53062 | 0.83 | 0.53913 |
Target: 5'- uUGGAUGAAAGCAAAGAU-GAuGUACUAa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAgCU-CAUGAU- -5' |
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8487 | 5' | -46.8 | NC_002169.1 | + | 104797 | 0.83 | 0.53913 |
Target: 5'- uUGGACGAAAGCAAAGAUUGAcUAUg- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCUcAUGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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