miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8487 5' -46.8 NC_002169.1 + 105366 0.83 0.528377
Target:  5'- uUGGACaAAAGCAAAGAUCGuGUAUUAa -3'
miRNA:   3'- -ACCUGcUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 119484 0.84 0.486233
Target:  5'- uUGGACGAAAGCAAAGAUCGucUAUg- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCucAUGau -5'
8487 5' -46.8 NC_002169.1 + 53074 0.84 0.475944
Target:  5'- uUGGACGAAAGCAAAGAUCauGUAUUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 11202 0.85 0.445752
Target:  5'- uUGGACGAAAGCAAAGAUCauGUAUUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 120073 0.85 0.41666
Target:  5'- -cGACGAAAGCAAAGAUCGuGUAUUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 42158 0.86 0.379734
Target:  5'- -aGAUGAAAGCAAAGAUCGuGUACUGa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 71795 0.86 0.370851
Target:  5'- -cGAUGAAAGCAAAGAUCGuGUACUGa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 105253 0.87 0.345063
Target:  5'- -cGAUGAAAGCAAAGAUCGuGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 53154 0.89 0.275606
Target:  5'- uUGGACGAAAGCAAAGAUCauGUACUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 105117 0.89 0.275606
Target:  5'- uUGGACGAAAGCAAAGAUCauGUACUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 71668 0.89 0.255074
Target:  5'- uUGGACGAAAGCAAAGAUCauGUACUAg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 52696 0.89 0.255074
Target:  5'- uUGGACGAAAGCAAAGAUCauGUACUAg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 119760 0.9 0.235813
Target:  5'- -cGACGAAAGCAAAGAUCGuGUACUGa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 11317 0.9 0.22967
Target:  5'- -cGACGAAAGCAAAGAUCGuGUACUAu -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 105238 0.91 0.217788
Target:  5'- -cGACGAAAGCAAAGAUCGuGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 105571 0.92 0.195599
Target:  5'- uUGGAUGAAAGCAAAGAUCGuGUAUUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 41902 0.93 0.170662
Target:  5'- uUGGACGAAAGCAAA-AUCGAGUACUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAGCUCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 52944 0.94 0.152799
Target:  5'- uUGGACGAAAGCAAAGAUCGuGUACc- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCuCAUGau -5'
8487 5' -46.8 NC_002169.1 + 11098 0.94 0.152799
Target:  5'- uUGGACGAAAGCAAAGAUCGuGUACc- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCuCAUGau -5'
8487 5' -46.8 NC_002169.1 + 119633 0.94 0.152799
Target:  5'- uUGGACGAAAGCAAAGAUCGuGUACc- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCuCAUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.