Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8488 | 3' | -43.8 | NC_002169.1 | + | 105207 | 0.87 | 0.530808 |
Target: 5'- ----aUACACGAUCUUUGCUUUUGUCc -3' miRNA: 3'- uuaucAUGUGCUAGAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 52664 | 0.84 | 0.66663 |
Target: 5'- -uUAGUACACGAUgUUUGCUUUCaUCg -3' miRNA: 3'- uuAUCAUGUGCUAgAAACGAAAGcAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 119325 | 0.83 | 0.733801 |
Target: 5'- ----aUAgACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- uuaucAUgUGCUAGAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 11570 | 0.83 | 0.744685 |
Target: 5'- -cUAGUACuCGAUCUUUGCUUUCaUCg -3' miRNA: 3'- uuAUCAUGuGCUAGAAACGAAAGcAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 41772 | 0.81 | 0.81673 |
Target: 5'- ----aUACuCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- uuaucAUGuGCUAGAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 41873 | 0.81 | 0.826282 |
Target: 5'- ----aUACACGAUCUUUGCUUUCaUCg -3' miRNA: 3'- uuaucAUGUGCUAGAAACGAAAGcAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 105026 | 0.81 | 0.835613 |
Target: 5'- ----cUACuCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- uuaucAUGuGCUAGAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 105694 | 0.81 | 0.835613 |
Target: 5'- uGUAaUACACGAUCUUUGCUUUC-UCg -3' miRNA: 3'- uUAUcAUGUGCUAGAAACGAAAGcAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 105600 | 0.8 | 0.844714 |
Target: 5'- ----aUACACaAUCUUUGCUUUCGUCg -3' miRNA: 3'- uuaucAUGUGcUAGAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 52976 | 0.8 | 0.853574 |
Target: 5'- -uUAGUACACcAUCUUUGCUUUCaUCg -3' miRNA: 3'- uuAUCAUGUGcUAGAAACGAAAGcAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 11636 | 0.8 | 0.862184 |
Target: 5'- -cUAGUACAUGAUgUUUGCUUUCaUCg -3' miRNA: 3'- uuAUCAUGUGCUAgAAACGAAAGcAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 105322 | 0.79 | 0.886433 |
Target: 5'- --aAGUACACaAUgUUUGCUUUCGUCc -3' miRNA: 3'- uuaUCAUGUGcUAgAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 105412 | 0.79 | 0.901211 |
Target: 5'- ----aUACACGAUCUUUGCUUUCaUCc -3' miRNA: 3'- uuaucAUGUGCUAGAAACGAAAGcAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 42453 | 0.78 | 0.91483 |
Target: 5'- --aAGUcaaACACaAUCUUUGCUUUCGUCc -3' miRNA: 3'- uuaUCA---UGUGcUAGAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 42378 | 0.76 | 0.968763 |
Target: 5'- -----aACACaAUCUUUGCUUUCGUCc -3' miRNA: 3'- uuaucaUGUGcUAGAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 52900 | 0.75 | 0.980251 |
Target: 5'- -uUAGUACAUcAUCUUUGCUUUCaUCc -3' miRNA: 3'- uuAUCAUGUGcUAGAAACGAAAGcAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 105145 | 0.74 | 0.986538 |
Target: 5'- -----cACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- uuaucaUGUGCUAGAAACGAAAGcAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 104957 | 0.73 | 0.995271 |
Target: 5'- cAUAGU-CA--AUCUUUGCUUUCGUCc -3' miRNA: 3'- uUAUCAuGUgcUAGAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 10711 | 0.71 | 0.999159 |
Target: 5'- -uUAGUACACaAUgUUUGCUUucaucuacgaUCGUCg -3' miRNA: 3'- uuAUCAUGUGcUAgAAACGAA----------AGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 10520 | 0.7 | 0.99967 |
Target: 5'- -----cACaACGAUCUUUGCUUUCaUCg -3' miRNA: 3'- uuaucaUG-UGCUAGAAACGAAAGcAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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