miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8488 3' -43.8 NC_002169.1 + 42187 0.92 0.334105
Target:  5'- uGUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uUAUCAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 11765 0.92 0.309577
Target:  5'- uAUAaUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uUAUcAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 10709 0.94 0.264695
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuAUCAUGuGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 11036 0.94 0.264695
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuAUCAUGuGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 105093 0.94 0.264695
Target:  5'- -uUAGUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 42063 0.94 0.257749
Target:  5'- -uUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuAUCAUGuGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 11173 0.94 0.257749
Target:  5'- ----aUGCACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- uuaucAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 120234 0.95 0.225237
Target:  5'- uGUAaUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- uUAUcAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 105287 0.95 0.213237
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAg -5'
8488 3' -43.8 NC_002169.1 + 10817 0.97 0.175492
Target:  5'- -cUAGUACACGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- uuAUCAUGUGCUAgAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 104956 0.98 0.156695
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 53315 0.98 0.156695
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 53123 1 0.12091
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- uuaUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 52857 1 0.117439
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 71829 1 0.117439
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 105501 1.02 0.092847
Target:  5'- --cAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 52784 1.02 0.092847
Target:  5'- --cGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 11230 1.02 0.09014
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 10902 1.02 0.087508
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 10937 1.04 0.07319
Target:  5'- -uUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.