miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8488 3' -43.8 NC_002169.1 + 105694 0.81 0.835613
Target:  5'- uGUAaUACACGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- uUAUcAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 105026 0.81 0.835613
Target:  5'- ----cUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaucAUGuGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 41873 0.81 0.826282
Target:  5'- ----aUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuaucAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 41772 0.81 0.81673
Target:  5'- ----aUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaucAUGuGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 11570 0.83 0.744685
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuAUCAUGuGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 119325 0.83 0.733801
Target:  5'- ----aUAgACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaucAUgUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 52664 0.84 0.66663
Target:  5'- -uUAGUACACGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- uuAUCAUGUGCUAgAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 105207 0.87 0.530808
Target:  5'- ----aUACACGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- uuaucAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 11361 0.88 0.498134
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaucAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 53233 0.88 0.498134
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaucAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 53042 0.89 0.425764
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 11010 0.89 0.415941
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 119614 0.89 0.415941
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 104835 0.89 0.415941
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 42257 0.89 0.415941
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 11127 0.9 0.406257
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- uuaucAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 104769 0.9 0.406257
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- uuaucAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 119516 0.9 0.406257
Target:  5'- -uUAGUACACGAUCUUUGCUUUUaUCg -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 41999 0.9 0.396716
Target:  5'- --cAGUACACGAUCUUUGCUUUCaUCu -3'
miRNA:   3'- uuaUCAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 71637 0.91 0.351233
Target:  5'- --cAGUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuaUCAUGUGCUAGAAACGAAAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.