miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8488 3' -43.8 NC_002169.1 + 29673 0.66 0.999997
Target:  5'- -----aACGCGAUCggUUGCcUUUUGUCu -3'
miRNA:   3'- uuaucaUGUGCUAGa-AACG-AAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 31417 0.7 0.99967
Target:  5'- ---cGUGCACGAUCUcgucgaUGgUUUUGUCg -3'
miRNA:   3'- uuauCAUGUGCUAGAa-----ACgAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 41109 0.67 0.999982
Target:  5'- cGAUAGUGCG-GAUCggUGCUcUCGa- -3'
miRNA:   3'- -UUAUCAUGUgCUAGaaACGAaAGCag -5'
8488 3' -43.8 NC_002169.1 + 41772 0.81 0.81673
Target:  5'- ----aUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaucAUGuGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 41873 0.81 0.826282
Target:  5'- ----aUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuaucAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 41999 0.9 0.396716
Target:  5'- --cAGUACACGAUCUUUGCUUUCaUCu -3'
miRNA:   3'- uuaUCAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 42063 0.94 0.257749
Target:  5'- -uUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuAUCAUGuGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 42187 0.92 0.334105
Target:  5'- uGUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uUAUCAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 42193 1.06 0.055853
Target:  5'- uAUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uUAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 42257 0.89 0.415941
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 42378 0.76 0.968763
Target:  5'- -----aACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaucaUGUGcUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 42453 0.78 0.91483
Target:  5'- --aAGUcaaACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaUCA---UGUGcUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 52664 0.84 0.66663
Target:  5'- -uUAGUACACGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- uuAUCAUGUGCUAgAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 52784 1.02 0.092847
Target:  5'- --cGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 52857 1 0.117439
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 52900 0.75 0.980251
Target:  5'- -uUAGUACAUcAUCUUUGCUUUCaUCc -3'
miRNA:   3'- uuAUCAUGUGcUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 52976 0.8 0.853574
Target:  5'- -uUAGUACACcAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuAUCAUGUGcUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 53042 0.89 0.425764
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 53123 1 0.12091
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- uuaUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 53233 0.88 0.498134
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaucAUGUGCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.